GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002748-TA|BGIBMGA002748-PA|IPR002126|Cadherin
         (1518 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     25   3.0  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 13/126 (10%)

Query: 302 NLP-EFEVDFYNISIVENLPNGFSVLQVMATDKDQGENGEFTYQLDDPKGAFSIDPRSGW 360
           N P E  +D + +S++    + F+  +V +     GE  +F    D P+  +       W
Sbjct: 291 NCPIEVSIDNHTLSVISTDGSDFNATEVDSLVTYAGERFDFIVTADQPQDVY-------W 343

Query: 361 LTVRNQTVLDR---EAHSSLRMKVYAKETN-PSVVGTFADSQRIAKWRRQPLETNAPLEK 416
           +  R     D     A+    ++    +TN PS   T+ +S+R  K +  PL      + 
Sbjct: 344 MHFRGLMDCDERFTRAYQVAVLEYKGTQTNYPSYEPTYDNSRREGK-QLNPLNKGTEADS 402

Query: 417 TTYVFP 422
           +    P
Sbjct: 403 SFVTLP 408


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.136    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 350,549
Number of Sequences: 317
Number of extensions: 16230
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 1
length of query: 1518
length of database: 114,650
effective HSP length: 66
effective length of query: 1452
effective length of database: 93,728
effective search space: 136093056
effective search space used: 136093056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)