GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002748-TA|BGIBMGA002748-PA|IPR002126|Cadherin
         (1518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomy...    41   0.002
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    32   0.54 
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    31   1.2  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    31   1.2  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    30   2.9  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    29   3.8  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    29   5.0  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    29   6.6  
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   8.7  

>SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 5/101 (4%)

Query: 160 HYSIVSGNDDGHFALESSHKPVLLLRKVLDYDAGDKEFQLVIM----ASGKRIHKE-ILF 214
           H  I   N+ G  A +SS KP   +R   D     K    V+     A+G +I ++  + 
Sbjct: 4   HELIEESNNSGTPATKSSSKPTKKIRPRNDLVHYSKALSKVLRHTAKANGLQIREDGYIE 63

Query: 215 PEPIHAIDQDLGVGATLRYELISGNDRKLFSLDSVNGSLFL 255
            + I  + Q  G+G  L   ++ GND+K F+++ V G L++
Sbjct: 64  VDSILKLPQFRGMGMELLLSIVKGNDKKRFTMEEVEGVLYI 104


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 396 DSQRIAKWRRQPLETNAPL--EKTTYVFPDKVG-TKTENIEYYDEQLMSFVNVEVTLLDA 452
           D +   K+     E   PL  ++T+ V P+K   TKTENI+  + +LM  ++ E+ L DA
Sbjct: 198 DDEIAKKYLLGQQEAEEPLVQQQTSIVNPEKEEVTKTENIKSLEGELMGTISAELHLFDA 257


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 14/137 (10%)

Query: 851  DSLDREKKIMYKLSLVARDTGGLSSEAELIIM-IGDENDNKPEFNQIEENSKVRIHRETK 909
            + L+  + ++Y L L   +TG L    EL++    D+ +   EF+Q + N+  +I  E K
Sbjct: 964  EELETNRGVVYHL-LEENETGKLD---ELVLEEYADQLER--EFHQKKRNTLEKIRLELK 1017

Query: 910  -LNGTAGFTIIEVKPKNKFAL----DVDQLGPLFLIPENIPIGTTIIKLNALDLDSGLNG 964
               G       ++ P   F +    + ++L    ++P N+   T   +  A+ LD G++G
Sbjct: 1018 DPYGEQRNVFHKLTPSEIFLMLTGENPEELQADAIVPVNVRRVTN--RFVAVKLDCGIDG 1075

Query: 965  QIRYEFNSEVYIPPSKL 981
             I+ +  S+ +IPP +L
Sbjct: 1076 NIKADEVSDDFIPPPQL 1092


>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 36/143 (25%), Positives = 58/143 (40%), Gaps = 13/143 (9%)

Query: 1162 HPEADELSNHN-FESVMMIPVYKATI--EENAPIGTTVAKVFANDTDFIGNGNGLI--LY 1216
            HP+   + + N  + +  I  Y  T+   EN PI   + +      D I +GN  I  L 
Sbjct: 987  HPDISSIESENSLDFIAYIRFYVDTVVNSENVPIVFHLMQRIKQSYDVIEDGNNYIYVLS 1046

Query: 1217 SLPQRKNQ---QNLG--LPSLSSTAILMVTVA-DVP--DEVEMSDKPVFISRYYELEIEE 1268
             + Q+  Q   QN G  L +      L   +   +P  DE +     +FI+   E +IE 
Sbjct: 1047 DMAQKILQVKSQNFGWSLTTYPKQIKLPYEILRPIPSIDEKKRIFNKIFITPKMESQIEH 1106

Query: 1269 NVNAPVELVSLNLTEHYENFKMR 1291
             +  PV   +   T  + N K +
Sbjct: 1107 AIRTPVSSFAKQTTNKHANLKQK 1129


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 513  INPNTGTVSVAESPILEGRHALFVEASDQPA-NPSERRYSLAVVTIEVTRGTKGNKPDIP 571
            ++ N  +    ES +  G  ALF EA D+P+   +E    L +   E    T  ++ DI 
Sbjct: 1023 LDQNHNSEKDLESILRHGARALFEEAGDEPSIKYNEYSVELLISEAEKQEDTSTDESDIK 1082

Query: 572  DFMGAPYEFWVGSNVGIGTSVGQIRVNDAFEQNDV 606
                  +  W   N  I ++  +++ N   ++ DV
Sbjct: 1083 SNKFGFFRVW--DNKHISSNHYEVKENVLVDEEDV 1115


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1207

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 1143 DVNDNSPKFYAFDELLEWKHPE---ADELSNHNFESVMMIPVYKATIEENAPIGTTVAKV 1199
            DV D++  F   DE+  WK      AD ++  +FES M I   +      +P+ T   ++
Sbjct: 892  DVVDDASAFVGADEIFLWKRNSPLAADHIAAGDFESAMKILNKQVGAINFSPLKTRFLEI 951

Query: 1200 FANDTDFIGNGNGL 1213
            +     ++   +GL
Sbjct: 952  YTASRVYLPTISGL 965


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
            role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 1051 NFNVEEAQYTRRVLGKVDATDADFGQNAN--LTYF-IQPSDTDLPFEISPLTGVLSVNGE 1107
            NF +E+A      +GKVD+ D +  Q  N  LT+F +  +  ++P  I     + S N  
Sbjct: 122  NFQIEKAFKQSLNIGKVDSADENNNQRTNSPLTWFQLSNASAEVPTYIGVYKHMFSGNNH 181

Query: 1108 LDRE 1111
            + ++
Sbjct: 182  ITKD 185


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 863 LSLVARDTGGLSSEAELIIMIGDENDNKPEFNQ--IEENSK--VRIHRE 907
           LSL       L+S  EL+  + DEN  K +  Q  IEE SK   R+HRE
Sbjct: 338 LSLYQTQKKELASSNELLASVRDENTKKLKELQDIIEEQSKHMARLHRE 386


>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 644 DFEAVALQENANLSIVTNATVHVVDVNDERGVLLKGAHSPIIF 686
           D   +AL +  N       TV+V+D    R  LL G H  +IF
Sbjct: 45  DINIIALSKKINSK---GFTVYVLDATTRRSALLSGKHDTMIF 84


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.136    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,195,110
Number of Sequences: 5004
Number of extensions: 338705
Number of successful extensions: 824
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 822
Number of HSP's gapped (non-prelim): 11
length of query: 1518
length of database: 2,362,478
effective HSP length: 82
effective length of query: 1436
effective length of database: 1,952,150
effective search space: 2803287400
effective search space used: 2803287400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)