GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002748-TA|BGIBMGA002748-PA|IPR002126|Cadherin
         (1518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779     35   0.44 
01_01_1209 - 9738501-9738516,9738703-9739161,9739389-9739608,973...    31   7.1  
04_03_0103 + 11288977-11290353,11291962-11292075,11294987-112954...    31   9.4  

>03_02_0860 - 11864510-11864732,11864867-11865191,11866213-11867779
          Length = 704

 Score = 35.1 bits (77), Expect = 0.44
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 396 DSQRIAKWRRQPLETNAPLEKTTYVFPDKVGTKTEN 431
           D +R AK++ + L  N  L +  YVF DK GT TEN
Sbjct: 459 DDKRQAKFQCRALNINEDLGQIKYVFSDKTGTLTEN 494


>01_01_1209 -
           9738501-9738516,9738703-9739161,9739389-9739608,
           9739708-9739831,9739927-9740635,9741826-9742132,
           9742213-9743704
          Length = 1108

 Score = 31.1 bits (67), Expect = 7.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 396 DSQRIAKWRRQPLETNAPLEKTTYVFPDKVGTKTEN 431
           D    +K++ + L  N  L +  YVF DK GT TEN
Sbjct: 436 DESSRSKFQCRALNINEDLGQIKYVFSDKTGTLTEN 471


>04_03_0103 +
           11288977-11290353,11291962-11292075,11294987-11295436,
           11295813-11295910,11296023-11296206,11296979-11297068,
           11301608-11301727,11301812-11302054,11302715-11302988,
           11303237-11303357,11303591-11303849
          Length = 1109

 Score = 30.7 bits (66), Expect = 9.4
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 465 YEFSMKSNAKVGTVIGKVKAVDPDLGQNGMVLY 497
           +EF +K +A+ G V+ + +  DP  G++  V+Y
Sbjct: 335 WEFHLKPDARAGMVVSRARVQDPATGEHRDVMY 367


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.136    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,885,872
Number of Sequences: 37544
Number of extensions: 1913872
Number of successful extensions: 3854
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3851
Number of HSP's gapped (non-prelim): 3
length of query: 1518
length of database: 14,793,348
effective HSP length: 92
effective length of query: 1426
effective length of database: 11,339,300
effective search space: 16169841800
effective search space used: 16169841800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 66 (30.7 bits)