GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002747-TA|BGIBMGA002747-PA|IPR005520|Attacin, N-terminal
region, IPR005521|Attacin, C-terminal region
         (214 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   3.6  
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    25   6.4  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    25   8.4  

>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 39  SGAALKVPLTGNDKNVLSAIGSADFNDRHKLSAASAGLALDNI 81
           SGAA     T  +K V SA G A F       + ++GL  D+I
Sbjct: 574 SGAATGEAKTNLEKAVTSASGKASFTGFAPSQSTTSGLNFDSI 616


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 101 GVAGKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGGVDYMFKQKVGASLSAAHS 160
           G A +V +   + H   A   +  +SP   PNA   N    G   + +  +   LS+  S
Sbjct: 409 GEAKQVVITMPSTHFTPANNSSANHSPLMAPNASTLNPSSLGASNLSQPSLANHLSS--S 466

Query: 161 DVINRNDYSAGGKLNLFRS 179
            + +   +S+GG  + F S
Sbjct: 467 GLFDNGLFSSGGLSSNFSS 485


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/59 (25%), Positives = 25/59 (42%)

Query: 55   LSAIGSADFNDRHKLSAASAGLALDNINGHGLSLTGTRIPGFGEQLGVAGKVNLFHNNN 113
            ++    A    ++ + +AS+G     +NG G     T    F +      + NL HNNN
Sbjct: 1033 ITKTAGASVEIQNNIESASSGGDKTQLNGPGADQPVTATITFDKTSPWRNRENLSHNNN 1091


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 987,542
Number of Sequences: 5004
Number of extensions: 41254
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 3
length of query: 214
length of database: 2,362,478
effective HSP length: 70
effective length of query: 144
effective length of database: 2,012,198
effective search space: 289756512
effective search space used: 289756512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)