GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002747-TA|BGIBMGA002747-PA|IPR005520|Attacin, N-terminal
region, IPR005521|Attacin, C-terminal region
         (214 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016     30   1.2  
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288...    28   6.6  
11_04_0009 - 12132781-12133272                                         27   8.7  
09_04_0631 - 19114785-19114825,19114911-19114995,19115092-191152...    27   8.7  

>04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016
          Length = 360

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 61  ADFNDRHKLSAASAGLALDNINGHGLSLTGTRIPGFGEQLGVAGKVNL 108
           A  N+R + S AS  +A  + + HG+ + G   P +G     AG ++L
Sbjct: 173 AGHNERRRRSNASEAMARGSAHPHGMPVLGHGFPPYGLPTSSAGALSL 220


>08_02_1267 +
           25728324-25728407,25728436-25728502,25728753-25728828,
           25729388-25729450,25729640-25729896,25731299-25731440,
           25731524-25732017,25732398-25732536,25733805-25733876,
           25733960-25734040,25734677-25734843,25734942-25735147,
           25735301-25735427,25735515-25735639
          Length = 699

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 87  SLTGTRIPGFGEQLGVAGKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGGVDYM 146
           S+T     GF E  G+   V+L +    DL+ +   IR  P+   N   F +L  G+D  
Sbjct: 129 SITYVGDEGFIEA-GINHNVDLNNLQQTDLARRYSTIRFFPNGTRNCYTFKSLTPGLDLR 187

Query: 147 -FKQKVGASLSAAHSDVI 163
            F++K+    +  H+ V+
Sbjct: 188 PFQEKIYPGSNMTHALVL 205


>11_04_0009 - 12132781-12133272
          Length = 163

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 140 GGGVDYMFKQKVGASLSAAHSDVINRNDYSAGG 172
           G GVD M  + V A+ S+A    +   D+S GG
Sbjct: 26  GEGVDGMAPEAVNATASSARLGAVASGDWSGGG 58


>09_04_0631 -
           19114785-19114825,19114911-19114995,19115092-19115286,
           19115372-19115446,19115530-19115598,19115693-19115758,
           19115847-19116062,19116155-19116508
          Length = 366

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 69  LSAASAGLALDNINGHGLSLTGTRI--PGFGEQLG--VAGKVNLFHNNNHDLSAKAFAIR 124
           +SAA+AGL L  ++G G +   T    PGF E+      G   LF       + +    R
Sbjct: 11  MSAAAAGLDLGVLDGGGGAFLETLCGGPGFAERAARLCGGGAGLFGLPAVGNAERGGCSR 70

Query: 125 NSPSAIPNAPNFNTLGGGVDYMFKQKVGASLSA 157
              S++ +    +  GGG D   K+K  AS +A
Sbjct: 71  EG-SSVSDPAWAHATGGGGDNARKRKAPASAAA 102


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.132    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,390,417
Number of Sequences: 37544
Number of extensions: 278106
Number of successful extensions: 521
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 4
length of query: 214
length of database: 14,793,348
effective HSP length: 79
effective length of query: 135
effective length of database: 11,827,372
effective search space: 1596695220
effective search space used: 1596695220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)