Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002746-TA|BGIBMGA002746-PA|IPR008161|Collagen helix
repeat, IPR008160|Collagen triple helix repeat
         (135 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   4.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   4.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   4.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   6.1  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/21 (42%), Positives = 10/21 (47%)

Query: 11  KGERGDPGLPGTDGIPGQEGP 31
           K  R +PG PG  G  G   P
Sbjct: 326 KTARENPGPPGVPGDHGDHAP 346


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/21 (42%), Positives = 10/21 (47%)

Query: 11  KGERGDPGLPGTDGIPGQEGP 31
           K  R +PG PG  G  G   P
Sbjct: 326 KTARENPGPPGVPGDHGDHAP 346


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 9/21 (42%), Positives = 10/21 (47%)

Query: 11  KGERGDPGLPGTDGIPGQEGP 31
           K  R +PG PG  G  G   P
Sbjct: 265 KTARENPGPPGVPGDHGDHAP 285


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 123 DYTDNSHLTHHHD 135
           D  DN+H  H+H+
Sbjct: 418 DNQDNNHYNHNHN 430


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.143    0.475 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,066
Number of Sequences: 429
Number of extensions: 789
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 135
length of database: 140,377
effective HSP length: 52
effective length of query: 83
effective length of database: 118,069
effective search space:  9799727
effective search space used:  9799727
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.8 bits)
S2: 40 (20.2 bits)