GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002746-TA|BGIBMGA002746-PA|IPR008161|Collagen helix
repeat, IPR008160|Collagen triple helix repeat
         (135 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    25   4.1  
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    24   9.4  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    24   9.4  

>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 4  AQGEPGSKGERGDPGLPGTDGIPG 27
          A GE G  G+ G PG    +G PG
Sbjct: 70 AYGEEGLNGQPGGPGGGPGEGFPG 93


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 10  SKGERGDPGLPGTDGIPG 27
           SK   G PG+ G  G+PG
Sbjct: 563 SKAPAGPPGMGGMGGMPG 580


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/41 (26%), Positives = 13/41 (31%)

Query: 15  GDPGLPGTDGIPGQEGPVXXXXXXXXXXXXXEQGVPGLDAP 55
           G P +P   GIPG   P                  PG+  P
Sbjct: 541 GYPAVPAMPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMP 581


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.143    0.475 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 478,502
Number of Sequences: 5004
Number of extensions: 11197
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 5
length of query: 135
length of database: 2,362,478
effective HSP length: 66
effective length of query: 69
effective length of database: 2,032,214
effective search space: 140222766
effective search space used: 140222766
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 49 (23.8 bits)