GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002745-TA|BGIBMGA002745-PA|IPR008160|Collagen triple
helix repeat, IPR008161|Collagen helix repeat
         (315 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0194 + 13362503-13362627,13363247-13363343,13363404-13363460     30   2.8  
04_04_1354 - 32841778-32841983,32842079-32843093,32843184-328435...    28   8.5  

>09_03_0194 +
          13362503-13362627,13363247-13363343,13363404-13363460
          Length = 92

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 64 DEHVRSSRGRPGDKGQKGEHGSPGFD 89
          +E  +  +G+ G +G +GE G+ GFD
Sbjct: 10 EEEGKEKKGKEGSEGNRGEDGNEGFD 35


>04_04_1354 -
           32841778-32841983,32842079-32843093,32843184-32843518,
           32843590-32844019,32844155-32844214,32844531-32844651,
           32845321-32846132
          Length = 992

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 61  HPGDEHVRSSRGRPG-DKGQKGEHGSPGF 88
           HPG EH     G PG   G  G    PG+
Sbjct: 944 HPGQEHHHHHYGHPGRSNGPSGSGNKPGY 972


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.139    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,405,980
Number of Sequences: 37544
Number of extensions: 193625
Number of successful extensions: 456
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 2
length of query: 315
length of database: 14,793,348
effective HSP length: 82
effective length of query: 233
effective length of database: 11,714,740
effective search space: 2729534420
effective search space used: 2729534420
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)