GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002745-TA|BGIBMGA002745-PA|IPR008160|Collagen triple
helix repeat, IPR008161|Collagen helix repeat
         (315 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   2.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   2.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.1  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 65  EHVRSSRGRPGDKGQKGEHG 84
           E ++++R  PG  G  G+HG
Sbjct: 323 ESMKTARENPGPPGVPGDHG 342


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 65  EHVRSSRGRPGDKGQKGEHG 84
           E ++++R  PG  G  G+HG
Sbjct: 323 ESMKTARENPGPPGVPGDHG 342


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 65  EHVRSSRGRPGDKGQKGEHG 84
           E ++++R  PG  G  G+HG
Sbjct: 262 ESMKTARENPGPPGVPGDHG 281


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 240 GEPGIRGKAGDRGEKG 255
           G+ G RG+ G+RG  G
Sbjct: 87  GKGGSRGRGGNRGRTG 102


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.139    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,154
Number of Sequences: 429
Number of extensions: 1505
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 315
length of database: 140,377
effective HSP length: 58
effective length of query: 257
effective length of database: 115,495
effective search space: 29682215
effective search space used: 29682215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)