Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002744-TA|BGIBMGA002744-PA|undefined
         (173 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   2.9  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   6.6  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   8.7  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 87  LADKSKSSTVVPQQASIAASTGPSQPTHRASWSYGTHLHCLITP 130
           L D + SS + P  A  +AS  P    H   +S  THL  L +P
Sbjct: 22  LLDNNDSSGI-PHSAESSASNSPD---HYERFSPSTHLMDLSSP 61


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 163 HATFKLSFDS 172
           H TFKL+FD+
Sbjct: 175 HVTFKLTFDN 184


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 15/49 (30%), Positives = 20/49 (40%)

Query: 5   RYELGREEACCRVAVEGGIRIYTSSEQQRSDRRSTEQILPARWKIFSLS 53
           RY   RE        E   R Y  + ++RS  R+  +    R  I SLS
Sbjct: 271 RYSRSREREQKSYKNENSYRKYRETSKERSRDRTERERSKERKIISSLS 319


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.129    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,969
Number of Sequences: 429
Number of extensions: 1819
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 173
length of database: 140,377
effective HSP length: 54
effective length of query: 119
effective length of database: 117,211
effective search space: 13948109
effective search space used: 13948109
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)