GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002744-TA|BGIBMGA002744-PA|undefined
         (173 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    26   3.5  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   4.7  
SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit L37|...    25   4.7  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   4.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   4.7  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    25   4.7  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    25   6.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   8.1  

>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 33 RSDRRSTEQILPARWKIFSLSFKPPKLVTCDGTIAAFTLHRQRIKNFSYH-NSRILADKS 91
          R    ST  ++P+   ++ L F+  K++ C+ +   +   RQR +    H +S I   K 
Sbjct: 31 RLSETSTPGVVPSVSTLWRLLFELQKMIECEPSCVEY--FRQRKEELESHVDSEIETSKD 88

Query: 92 KSS 94
          +SS
Sbjct: 89 ESS 91


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 130 PLQSIAAHDRIINAWRHTSS-AWQL 153
           PL   A  DR++  WR T+S AW++
Sbjct: 225 PLILSAGDDRLVKLWRMTASKAWEV 249


>SPCC645.09 |mrpl37||mitochondrial ribosomal protein subunit
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 76  IKNFS-YHNSRILADKSKSSTVVPQQASIAASTGPSQPTHRA 116
           I  FS Y N+ +L     SS+ + +++ +++   P +P H +
Sbjct: 18  ISQFSCYSNTLVLRSSRNSSSSLVKRSYVSSRVSPKKPQHNS 59


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 50  FSLSFKPPKLVTCDGTIAAFTLHRQRIKNFSYHNSRILADKSKSSTVVPQQASIAASTGP 109
           F  S  PP   T  G   A ++     +N +      LA  + S+++V Q      + G 
Sbjct: 532 FRSSASPPSAFTKAGN-EALSVPLSGARNTAASRPTNLAAGNSSASIVQQLLECGGTMGQ 590

Query: 110 SQPTHRASWSYGTHLHCLITPLQSIAAHDR 139
            + T R        +H L+ P+     HD+
Sbjct: 591 QKMTSRIRELTERVMHSLMRPVPLDLPHDQ 620


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 80  SYHNSRILADKSKSSTVVPQQASIAASTGPSQPTHRASWSYGTHLHCLITPLQSI 134
           SY+ S +L   S SST +    S  A++  S P   +S +  T      TPL S+
Sbjct: 408 SYNTSSVLPTSSVSSTPLSSANSTTATSASSTPL--SSVNSTTATSASSTPLSSV 460


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 76  IKNFSYHNSRI-LADKSKSSTVVPQQASIAASTGPSQPTHRASWS 119
           + N + H+  + L+  SK + +VP    +AA +G S P   A +S
Sbjct: 448 VNNRNLHSFEVDLSTTSKLAEMVPDDVILAALSGISSPADVAHYS 492


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 1/26 (3%)

Query: 51  SLSFKPPKLVTCDGTIAAFTLHRQRI 76
           S+ FKPP++V C G++AA  +  +++
Sbjct: 477 SVKFKPPRVVYC-GSLAAPEIKNEKL 501


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 50   FSLSFKPPKLVTCDGTIAAFTLHRQRIKNFSYHNSRILADKSKSSTVVPQQASIAASTGP 109
            FS S   P   T D ++++ +L        S+ ++  +      STV P  +SI+ +  P
Sbjct: 3641 FSSSSSEPS--TLDYSVSSSSLSSSIGVGSSFSSNSKVTSNKVPSTVSPHSSSISDTKSP 3698

Query: 110  SQPTHRASWSYGTH 123
            +  T  +S    TH
Sbjct: 3699 ATVTISSSSGQFTH 3712


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.129    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 809,331
Number of Sequences: 5004
Number of extensions: 29257
Number of successful extensions: 72
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 9
length of query: 173
length of database: 2,362,478
effective HSP length: 68
effective length of query: 105
effective length of database: 2,022,206
effective search space: 212331630
effective search space used: 212331630
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)