Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002744-TA|BGIBMGA002744-PA|undefined
(173 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0572 - 10796997-10797152,10797259-10797412,10798023-107980... 31 0.50
11_06_0500 + 24362627-24362828,24363046-24363704,24364958-243653... 30 0.88
09_02_0569 - 10752756-10753164,10753229-10753644,10754149-107553... 29 1.5
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 29 2.7
11_01_0024 + 163588-163897,164303-164406 28 3.6
10_08_0095 + 14760292-14760624,14760689-14761000,14761768-147624... 28 4.7
04_01_0222 - 2805329-2805780,2805866-2806611,2806730-2806778,280... 28 4.7
03_05_0361 - 23448459-23448910,23448990-23449406,23449542-234497... 28 4.7
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284... 27 6.2
02_05_1016 - 33514317-33514505,33514855-33515386,33516499-33516608 27 8.2
>09_02_0572 -
10796997-10797152,10797259-10797412,10798023-10798065,
10798470-10798588,10798718-10798926,10799534-10799583,
10799610-10799718
Length = 279
Score = 31.1 bits (67), Expect = 0.50
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 42 ILPARWKIFSLSFKPPKLVTC 62
+L RW FSLSF+ P+LV C
Sbjct: 10 LLACRWSRFSLSFESPRLVMC 30
>11_06_0500 +
24362627-24362828,24363046-24363704,24364958-24365300,
24366227-24366645
Length = 540
Score = 30.3 bits (65), Expect = 0.88
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 27 TSSEQQRSDRRSTEQILPARWKIFSLSFKPPKLVTCD-GTIAAFTLHRQRIKNFSY 81
T EQ+R + TE +L + F LS++ +L T D + + RQ+I+NF Y
Sbjct: 429 TPVEQKRRKKVETEYVLGGKDLEFILSYEDDELETFDEDMLKDQAMVRQQIENFGY 484
>09_02_0569 -
10752756-10753164,10753229-10753644,10754149-10755349,
10756770-10756991,10757615-10757767,10757883-10758034,
10758142-10758222,10758353-10758598,10759394-10759516
Length = 1000
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 119 SYGTHLHCLITPLQSIAAHDRIINAWRH 146
SYGTHL TP+QS+ R++ R+
Sbjct: 723 SYGTHLDLSYTPIQSLPVRFRLLKKLRY 750
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 84 SRILADKSKSSTVVPQQASIA-ASTGPSQPTHRASW 118
S+ LAD T P+ SI AST PSQ H A W
Sbjct: 1033 SQALADFVAEWTPAPETVSIPEASTDPSQLPHTAHW 1068
>11_01_0024 + 163588-163897,164303-164406
Length = 137
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 93 SSTVVPQQASIAASTGPSQPTHRASWSYGTHLHCLITPLQSIAAHDRII 141
++T P A + P+ PTH WS TH H L+ I +R++
Sbjct: 70 TTTPPPAGTMTVAPSTPNAPTHHGRWSRQTH-HPHEKDLERIEKSNRVL 117
>10_08_0095 +
14760292-14760624,14760689-14761000,14761768-14762489,
14762905-14763187,14763419-14763650,14763736-14764187
Length = 777
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 42 ILPARWKIFS-LSFKPPKLVTCDGTIAAFTLHRQRI 76
I+ +WKI + + P K V D +AAF LH RI
Sbjct: 689 IVKKQWKILKGIPYNPYKNVQSDIILAAFCLHNFRI 724
>04_01_0222 -
2805329-2805780,2805866-2806611,2806730-2806778,
2807031-2807748,2808513-2808824
Length = 758
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 42 ILPARWKIFS-LSFKPPKLVTCDGTIAAFTLHRQRI 76
I+ +WKI + + P K V D +AAF LH RI
Sbjct: 670 IVKKQWKILKGIPYNPYKNVQSDIILAAFCLHNFRI 705
>03_05_0361 -
23448459-23448910,23448990-23449406,23449542-23449735,
23449854-23449902,23450155-23450539,23450578-23450874,
23451650-23451961
Length = 701
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 42 ILPARWKIFS-LSFKPPKLVTCDGTIAAFTLHRQRI 76
I+ +WKI + + P K V D +AAF LH RI
Sbjct: 613 IVKKQWKILKGIPYNPYKNVQSDIILAAFCLHNFRI 648
>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
27829243-27829449,27829611-27829704,27829806-27829870,
27829946-27830398,27830467-27830760,27830837-27831295,
27831367-27831588,27831755-27831968,27832039-27832494,
27833280-27833389,27833468-27833644,27833758-27833979,
27834048-27834167,27834274-27834383,27834552-27834607,
27835252-27835440,27835602-27835775,27836066-27836281,
27837066-27837106,27837971-27837986,27838330-27838415,
27838737-27838910,27839093-27839149,27839720-27840064,
27840175-27840216,27840377-27840496,27840575-27840724,
27840830-27841534,27841609-27841954,27842978-27843080,
27844817-27844860,27845905-27846101,27846322-27846344,
27846802-27847122,27847406-27847579,27847843-27848047,
27848817-27848880,27850097-27850278,27850291-27850350,
27850688-27850748,27851249-27851313,27851491-27851569,
27851656-27852021,27852442-27852790,27852887-27852989,
27853103-27853373,27854296-27854405,27854515-27854652
Length = 3364
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 15 CRVAVEGGIRIYTSSEQQRSDRRSTEQILPARWKIFSLSFKPPKLVTCDGTIAA 68
CR AV + T ++Q DR E+I R + SL+ KL C I A
Sbjct: 1753 CRCAVGSKSLLRTGNKQVVGDRPKIEEICKLRLLLLSLAEMSLKLQVCLADIRA 1806
>02_05_1016 - 33514317-33514505,33514855-33515386,33516499-33516608
Length = 276
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/66 (18%), Positives = 28/66 (42%)
Query: 85 RILADKSKSSTVVPQQASIAASTGPSQPTHRASWSYGTHLHCLITPLQSIAAHDRIINAW 144
R+L + S+S+ + A ++W+ G H++ + I+ +D ++ +W
Sbjct: 100 RVLQEDSRSAVLAANARFYNAFKNGDLVAMHSAWAKGDHVYVVHPSAGRISGYDMVMQSW 159
Query: 145 RHTSSA 150
A
Sbjct: 160 EMVCDA 165
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.129 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,493,442
Number of Sequences: 37544
Number of extensions: 205490
Number of successful extensions: 458
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 10
length of query: 173
length of database: 14,793,348
effective HSP length: 77
effective length of query: 96
effective length of database: 11,902,460
effective search space: 1142636160
effective search space used: 1142636160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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