GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002744-TA|BGIBMGA002744-PA|undefined
         (173 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79597-2|CAB01860.2|  611|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AL132841-7|CAB61033.1|  611|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z72507-13|CAH60789.1|  515|Caenorhabditis elegans Hypothetical p...    28   3.1  
Z72507-10|CAA96629.1|  531|Caenorhabditis elegans Hypothetical p...    28   3.1  
AC024214-18|AAF36083.1|  211|Caenorhabditis elegans Nuclear pore...    28   3.1  
AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore...    28   3.1  
AC024801-12|AAF59643.4|  569|Caenorhabditis elegans Hypothetical...    27   7.2  
AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z79597-2|CAB01860.2|  611|Caenorhabditis elegans Hypothetical
           protein C33A11.1 protein.
          Length = 611

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 102 SIAASTGPSQPTHRASWSYGTHLHCLITPLQSIAAHDRIINAWRHTSSAWQLCITWTTGD 161
           ++  +TG S P HRA   YG       TP+  I+A+    + +    S W L    T G 
Sbjct: 156 NVRVATGGSHPYHRAQIPYGCAAQ---TPITDISAYTGYGSGY-ECGSTWSLSPDTTIGS 211

Query: 162 THAT 165
             A+
Sbjct: 212 ISAS 215


>AL132841-7|CAB61033.1|  611|Caenorhabditis elegans Hypothetical
           protein C33A11.1 protein.
          Length = 611

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 102 SIAASTGPSQPTHRASWSYGTHLHCLITPLQSIAAHDRIINAWRHTSSAWQLCITWTTGD 161
           ++  +TG S P HRA   YG       TP+  I+A+    + +    S W L    T G 
Sbjct: 156 NVRVATGGSHPYHRAQIPYGCAAQ---TPITDISAYTGYGSGY-ECGSTWSLSPDTTIGS 211

Query: 162 THAT 165
             A+
Sbjct: 212 ISAS 215


>Z72507-13|CAH60789.1|  515|Caenorhabditis elegans Hypothetical
           protein F17C11.7b protein.
          Length = 515

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 58  KLVTCDGTIAAFTLHRQRIKNFSYHNSRILADKSKSSTVVPQQASIAAST---GPSQPTH 114
           KL+ C     +  LH  ++ N  YH+S ++ ++         +  +  S     PSQ T 
Sbjct: 165 KLLACKENGISTLLHPSKLYNSVYHSSHLVVEQQCDKDQCNSKMEVGVSVVMRNPSQKTQ 224

Query: 115 RASWS 119
           R  WS
Sbjct: 225 R-HWS 228


>Z72507-10|CAA96629.1|  531|Caenorhabditis elegans Hypothetical
           protein F17C11.7a protein.
          Length = 531

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 58  KLVTCDGTIAAFTLHRQRIKNFSYHNSRILADKSKSSTVVPQQASIAAST---GPSQPTH 114
           KL+ C     +  LH  ++ N  YH+S ++ ++         +  +  S     PSQ T 
Sbjct: 181 KLLACKENGISTLLHPSKLYNSVYHSSHLVVEQQCDKDQCNSKMEVGVSVVMRNPSQKTQ 240

Query: 115 RASWS 119
           R  WS
Sbjct: 241 R-HWS 244


>AC024214-18|AAF36083.1|  211|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform b protein.
          Length = 211

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 99  QQASIAASTGPSQPTHRASWSYGTHLHCLITPLQSIAAHDRIINAWRHTSSAWQLCITWT 158
           Q   +A   G S P  + SW+     H     L + A++D+ +  W      WQ    W 
Sbjct: 47  QSYPMAELVGHSGPVWKVSWA-----HPKYGGLLASASYDKKVIIWNEQQGRWQKAYEWA 101

Query: 159 TGDTHAT 165
             +   T
Sbjct: 102 AHEASTT 108


>AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform a protein.
          Length = 313

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 99  QQASIAASTGPSQPTHRASWSYGTHLHCLITPLQSIAAHDRIINAWRHTSSAWQLCITWT 158
           Q   +A   G S P  + SW+     H     L + A++D+ +  W      WQ    W 
Sbjct: 47  QSYPMAELVGHSGPVWKVSWA-----HPKYGGLLASASYDKKVIIWNEQQGRWQKAYEWA 101

Query: 159 TGDTHAT 165
             +   T
Sbjct: 102 AHEASTT 108


>AC024801-12|AAF59643.4|  569|Caenorhabditis elegans Hypothetical
           protein Y50D7A.8 protein.
          Length = 569

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 69  FTLHRQRIKNFSYHNSRILADKSKSSTVVPQQASIAASTGPSQPT 113
           + + +Q   +  Y+N   + + S SS   PQQ S +++T P  P+
Sbjct: 413 YDMTQQMTTDDPYNNLSTINEPSSSSLPPPQQPSTSSTTEPVPPS 457


>AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical
           protein R10F2.6 protein.
          Length = 1150

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 57  PKLVTCDGTIAAFTLHRQRIKNFSYHNSRILADKS 91
           P L T  G  AA   H QRI+N  Y  S +L +KS
Sbjct: 341 PSLPTLPGPQAA-KKHFQRIQNSGYWRSYVLKEKS 374


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.129    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,430,508
Number of Sequences: 27539
Number of extensions: 163426
Number of successful extensions: 341
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 8
length of query: 173
length of database: 12,573,161
effective HSP length: 77
effective length of query: 96
effective length of database: 10,452,658
effective search space: 1003455168
effective search space used: 1003455168
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)