GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002743-TA|BGIBMGA002743-PA|undefined
         (135 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D9DCC2 Cluster: PREDICTED: hypothetical protein;...    33   1.5  
UniRef50_Q5YQF6 Cluster: Putative uncharacterized protein; n=1; ...    33   1.5  
UniRef50_Q4WJR4 Cluster: TRNA methyltransferase, putative; n=2; ...    33   2.0  
UniRef50_A6G337 Cluster: Putative uncharacterized protein; n=1; ...    32   3.5  
UniRef50_A0K0M4 Cluster: Oxidoreductase domain protein; n=4; Act...    32   3.5  
UniRef50_A5NVD0 Cluster: Putative uncharacterized protein precur...    32   4.6  
UniRef50_UPI0000F2AE4A Cluster: PREDICTED: hypothetical protein;...    31   6.1  
UniRef50_Q137V3 Cluster: Helix-turn-helix, AraC type; n=3; Rhodo...    31   6.1  
UniRef50_Q8RT51 Cluster: ABC-transporter protein; n=2; Pseudomon...    31   6.1  

>UniRef50_UPI0000D9DCC2 Cluster: PREDICTED: hypothetical protein;
           n=1; Macaca mulatta|Rep: PREDICTED: hypothetical protein
           - Macaca mulatta
          Length = 294

 Score = 33.5 bits (73), Expect = 1.5
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 31  PGVYGYRKPGLFDVFC-LRDDAATLRRGGPQLSPTQRRFLGRT--PMCIAVIVRLSGPRV 87
           P   G  + G    FC +      L R G +L P Q R LGRT  P C  ++ R + P  
Sbjct: 90  PAPTGDLEEGALGAFCAMSPRGRRLPREGSRLLP-QPRCLGRTRQPHCCLLMARPAQPLP 148

Query: 88  SLSAGGG 94
           S+ AGGG
Sbjct: 149 SVVAGGG 155


>UniRef50_Q5YQF6 Cluster: Putative uncharacterized protein; n=1;
           Nocardia farcinica|Rep: Putative uncharacterized protein
           - Nocardia farcinica
          Length = 284

 Score = 33.5 bits (73), Expect = 1.5
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 21  VMSLITCTGVPGVYGYRKPGLFDVFCLRDDAATLRRGGPQLSPTQRRFLGRTPMCIAVIV 80
           ++ L+   G P    Y  PG   V   RD    L  GGP+LSPT RRF+   P     + 
Sbjct: 112 LVELLRELGFPATIEYFAPGR-PVDLNRDGVIVL--GGPELSPTLRRFVAADPRLRRTVA 168

Query: 81  R 81
           R
Sbjct: 169 R 169


>UniRef50_Q4WJR4 Cluster: TRNA methyltransferase, putative; n=2;
           Trichocomaceae|Rep: TRNA methyltransferase, putative -
           Aspergillus fumigatus (Sartorya fumigata)
          Length = 502

 Score = 33.1 bits (72), Expect = 2.0
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 30  VPGVYGYRKPGLFDVFCLRDDAATLRRGGPQLSPTQRRFLGRTPMCIAVIVRLSGPRVSL 89
           V    G ++P +F     RD+   + RG PQ    +   LG T    ++ V    P   +
Sbjct: 252 VDATSGRQRPYIFTAD--RDEHIRVSRGPPQAHIIENYCLGHTSFVSSLCVPQWAPEYLV 309

Query: 90  SAGGGNHVV 98
           S GG NH++
Sbjct: 310 SGGGDNHLI 318


>UniRef50_A6G337 Cluster: Putative uncharacterized protein; n=1;
           Plesiocystis pacifica SIR-1|Rep: Putative
           uncharacterized protein - Plesiocystis pacifica SIR-1
          Length = 952

 Score = 32.3 bits (70), Expect = 3.5
 Identities = 23/52 (44%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 12  PR-RRYREPPVMSLITCTGVPGVYGYRKPGLFD-VFCLRDDAATLRRGGPQL 61
           PR RR  E P    +   GV  V+G+R+ GL      LR   AT RRGGP+L
Sbjct: 860 PRGRRRAEGPAAPRLGRAGVLLVHGHRRAGLRRRPRALRPPRATQRRGGPRL 911


>UniRef50_A0K0M4 Cluster: Oxidoreductase domain protein; n=4;
           Actinomycetales|Rep: Oxidoreductase domain protein -
           Arthrobacter sp. (strain FB24)
          Length = 370

 Score = 32.3 bits (70), Expect = 3.5
 Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 18  EPPVMSLITCTGVPGVYGYRKPGLFDVFCLRDDAATLRRGGPQLSPTQRRFLGRTPMCIA 77
           EP V S       PG      PG      LRD  A LR GG  +    R  +    +  A
Sbjct: 269 EPTVESAKPAGSAPGA----DPGQEIAGSLRDFVAALRTGGTPMGQVHRNIMSLAMVEAA 324

Query: 78  VIVRLSGPRVSLSAGGGNHVVTSVSLADRSCGLDDLRK 115
           V+   +G RVS+  G          LA+R  G+ ++ K
Sbjct: 325 VLSAATGTRVSVD-GLLEESYAEAILAERDPGVLEILK 361


>UniRef50_A5NVD0 Cluster: Putative uncharacterized protein
           precursor; n=1; Methylobacterium sp. 4-46|Rep: Putative
           uncharacterized protein precursor - Methylobacterium sp.
           4-46
          Length = 254

 Score = 31.9 bits (69), Expect = 4.6
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 78  VIVRLSGPRVSLSAGGGNHVVTSVSLADRSCGLDDLRKYFKKEIYTSVAPACAL 131
           +++   GPRV    GG  H V     A RS  LD   +  +K +   VAPA AL
Sbjct: 154 IVITAQGPRVFTGKGGDQHRVGDFEDAGRSSSLD---RRTRKLLAAMVAPAGAL 204


>UniRef50_UPI0000F2AE4A Cluster: PREDICTED: hypothetical protein;
           n=1; Monodelphis domestica|Rep: PREDICTED: hypothetical
           protein - Monodelphis domestica
          Length = 557

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 17/44 (38%), Positives = 20/44 (45%)

Query: 31  PGVYGYRKPGLFDVFCLRDDAATLRRGGPQLSPTQRRFLGRTPM 74
           PGVYG     L       DD  TLR  GP+L P   R +   P+
Sbjct: 234 PGVYGSDGRALEPAPSSTDDGETLREQGPELCPQSGRGIDPAPI 277


>UniRef50_Q137V3 Cluster: Helix-turn-helix, AraC type; n=3;
           Rhodopseudomonas palustris|Rep: Helix-turn-helix, AraC
           type - Rhodopseudomonas palustris (strain BisB5)
          Length = 330

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 47  LRDDAATLRRGGPQLSPTQRRFLGRTPMCIAVIVRLSGPRVSLSAGGGNHVVTSVSLADR 106
           + D AA    G   L    ++  G +PM  A  VRL+  R  L  G  +  VTSV+ A  
Sbjct: 244 ITDLAAVTNVGVRSLFKAFQKHRGYSPMAFAKAVRLNKAREMLMQGDPSRSVTSVAFA-- 301

Query: 107 SCGLDDL 113
            CG  +L
Sbjct: 302 -CGFSNL 307


>UniRef50_Q8RT51 Cluster: ABC-transporter protein; n=2; Pseudomonas
           aeruginosa|Rep: ABC-transporter protein - Pseudomonas
           aeruginosa
          Length = 585

 Score = 31.5 bits (68), Expect = 6.1
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 52  ATLRRGGPQLSPTQRRFLGRTPMCIAVIVRLSGPRVSLSAGGGNHVVTSVSLA 104
           A LRR  P L+ +++R  GR  + +A  VR+   +V    GG  HV+T VSL+
Sbjct: 289 AGLRRMAPILALSRKR--GRADLPVAATVRVDLDQVCFRYGG-RHVLTGVSLS 338


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.325    0.141    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,229,153
Number of Sequences: 1657284
Number of extensions: 6058336
Number of successful extensions: 14096
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 14095
Number of HSP's gapped (non-prelim): 9
length of query: 135
length of database: 575,637,011
effective HSP length: 92
effective length of query: 43
effective length of database: 423,166,883
effective search space: 18196175969
effective search space used: 18196175969
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 67 (31.1 bits)