GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002743-TA|BGIBMGA002743-PA|undefined
         (135 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos...    27   1.0  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    24   7.1  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    24   7.1  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    24   9.4  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    24   9.4  

>SPBC1347.06c |cki1||serine/threonine protein kinase
          Cki1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 11 APRRRYREPPVMSLITCTGVPGVYGYRKPGLFDVFCL 47
          AP+ R        L  CTG+P VY + + GL ++  +
Sbjct: 49 APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNILVI 85


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 48  RDDAATLRRGGPQLSPTQRRFLGRTPMCIAVIVRLSG--PRVSLSAGGGNHVVTSVSLAD 105
           +++ A L +  P     Q R L  T +    +   S   P VS S  G N  V+   + D
Sbjct: 212 KNELALLSKRIPVQYLLQMRALSETGLLYQELKVFSNYDPSVSQSIDGDN--VSKAFIND 269

Query: 106 RSCGLDDLRKYFKKEIYTSVAPACAL 131
           +S  L  L+    KE+   +A   +L
Sbjct: 270 QSLALQSLKSVISKELTNFLALIASL 295


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 4   VDRYDNVAPRRRYREPPVMSLITC---TGVPGVYGYRKPGLFDVFCLRDDAATL 54
           VD      P+++     V + +     T VPGVY Y    L D      DA T+
Sbjct: 889 VDEKSKTYPKQKSELSTVQNTVLVKADTAVPGVYHYEFTKLSDSLYSDSDAVTI 942


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 51  AATLRRGGPQLSPTQRRFLGRTPMCIAVIVR----LSGPRVSLSAGGGNHVV 98
           A  + RGG Q+ PT RR +  + +  + I++    L   +VS +A GG + V
Sbjct: 695 ADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSV 746


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 51  AATLRRGGPQLSPTQRRFLGRTPMCIAVIVR----LSGPRVSLSAGGGNHVV 98
           A  + RGG Q+ PT RR +  + +  + I++    L   +VS +A GG + V
Sbjct: 695 ADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSV 746


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.141    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,914
Number of Sequences: 5004
Number of extensions: 21795
Number of successful extensions: 51
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 5
length of query: 135
length of database: 2,362,478
effective HSP length: 66
effective length of query: 69
effective length of database: 2,032,214
effective search space: 140222766
effective search space used: 140222766
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 49 (23.8 bits)