GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002743-TA|BGIBMGA002743-PA|undefined
         (135 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0894 + 22346027-22347925                                         28   3.0  
04_03_0186 - 12427609-12427665,12429230-12429314,12431176-12431618     27   3.9  
04_01_0267 + 3584117-3584922,3585331-3585361                           27   3.9  
12_01_0696 + 5936869-5937068,5937705-5938179,5938240-5938665           27   5.2  
09_03_0148 + 12770010-12770266,12772172-12772314,12773214-127735...    27   6.8  
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086...    27   6.8  
09_02_0626 + 11352690-11353078,11353106-11354006                       26   9.0  
07_01_1039 - 9037689-9038225,9038831-9040627                           26   9.0  
02_05_0761 - 31550936-31551020,31551641-31552666,31553083-315531...    26   9.0  
01_01_0925 - 7306881-7308486,7308797-7308906                           26   9.0  

>08_02_0894 + 22346027-22347925
          Length = 632

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 66  RRFLGRTPMCIAVIVRLSGPRVSLSAGGGNHVVTSVSLA 104
           RR    +P  +    RLS    S+SAGGG    T+V +A
Sbjct: 47  RRLAPPSPAAVGSPRRLSSGSSSVSAGGGGGAATAVQVA 85


>04_03_0186 -
          12427609-12427665,12429230-12429314,12431176-12431618
          Length = 194

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 65 QRRFLGRTPMCIAVIVRLSGPRVSLSAGG 93
          +R F      C AV +R  GPR+   AGG
Sbjct: 31 RRLFESGVEGCFAVSIRQDGPRIGYEAGG 59


>04_01_0267 + 3584117-3584922,3585331-3585361
          Length = 278

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 109 GLDDLRKYFKKEIYTSVAPACALC 132
           G+ D +KY   EI  S++P+C +C
Sbjct: 242 GITDEQKYAVTEIELSLSPSCTIC 265


>12_01_0696 + 5936869-5937068,5937705-5938179,5938240-5938665
          Length = 366

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 91  AGGGNHVVTSVSLADRSCGLDDLRK 115
           +G G H+ T +     +CGLD LR+
Sbjct: 119 SGAGRHLATRICTIVAACGLDALRR 143


>09_03_0148 +
           12770010-12770266,12772172-12772314,12773214-12773596,
           12773895-12773971,12774061-12774211
          Length = 336

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 56  RGGPQLSPTQRRFLGRTPMC 75
           RGG  L+P +RR + R P C
Sbjct: 92  RGGVSLAPPRRRLVARGPRC 111


>04_04_1513 -
           34107700-34107765,34108475-34108551,34108640-34108688,
           34109144-34109218,34109447-34109554,34109728-34109835,
           34110708-34111256
          Length = 343

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 12  PRRRYREPPVMSLITCTGVPGVYG--YRKP---GLFDVFCLRDDAATLRRGGPQLS 62
           PRRR+R PP       +  P  Y   +R P    +  V CL D A   RR G  L+
Sbjct: 81  PRRRFRSPPARDGRRSSRAP-TYSTRFRLPPPLAIASVHCLSDLAPRPRRAGDALA 135


>09_02_0626 + 11352690-11353078,11353106-11354006
          Length = 429

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 47  LRDDAATLRRGGPQLSPTQRRFLGRTPMCIAVIVRLSG 84
           L D  A L R G ++  + RR+ G  P   A+ +RL G
Sbjct: 291 LSDAVARLERAGCRVGVSVRRYSGLPPTQPALALRLDG 328


>07_01_1039 - 9037689-9038225,9038831-9040627
          Length = 777

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 15/47 (31%), Positives = 20/47 (42%)

Query: 58  GPQLSPTQRRFLGRTPMCIAVIVRLSGPRVSLSAGGGNHVVTSVSLA 104
           GP  +      +G  P      +R+   RVS+  GGG   VT  S A
Sbjct: 264 GPDSALAMASSVGAAPAGAVAAIRIPILRVSIYDGGGTPEVTEASYA 310


>02_05_0761 -
           31550936-31551020,31551641-31552666,31553083-31553117,
           31554921-31555039,31555215-31555331,31556131-31556205,
           31556885-31557017
          Length = 529

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 67  RFLGRTPMCIAVIVRLSGPRVSLSAGGGNHVVTS 100
           ++LG  P C+ +   +S P + + AG G+ V+ +
Sbjct: 276 KYLGFNPDCLFIGCDISPPLIDICAGRGHEVLVA 309


>01_01_0925 - 7306881-7308486,7308797-7308906
          Length = 571

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 16/44 (36%), Positives = 21/44 (47%)

Query: 75  CIAVIVRLSGPRVSLSAGGGNHVVTSVSLADRSCGLDDLRKYFK 118
           C+AVI    GP   L+ GGG       S+   S GLD   K ++
Sbjct: 441 CLAVIEGHRGPVRCLAVGGGEAGDVEGSMVVYSAGLDKSVKVWR 484


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.141    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,574,681
Number of Sequences: 37544
Number of extensions: 189268
Number of successful extensions: 474
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 465
Number of HSP's gapped (non-prelim): 10
length of query: 135
length of database: 14,793,348
effective HSP length: 75
effective length of query: 60
effective length of database: 11,977,548
effective search space: 718652880
effective search space used: 718652880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)