GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002743-TA|BGIBMGA002743-PA|undefined
         (135 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2950|AAF49312.2| 1660|Drosophila melanogaster CG6052-PA...    29   2.8  
M14548-1|AAB59221.1|  613|Drosophila melanogaster segmentation p...    27   8.5  
AY059447-1|AAL13353.1|  590|Drosophila melanogaster GH22686p pro...    27   8.5  
AE014134-2152|AAF53160.1|  590|Drosophila melanogaster CG6716-PA...    27   8.5  
AE014134-2151|AAN10801.1|  613|Drosophila melanogaster CG6716-PB...    27   8.5  

>AE014296-2950|AAF49312.2| 1660|Drosophila melanogaster CG6052-PA
            protein.
          Length = 1660

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 27   CTGVPGVYGYRKPGL 41
            C  +PG YG+RKPG+
Sbjct: 1208 CCDIPGYYGWRKPGV 1222


>M14548-1|AAB59221.1|  613|Drosophila melanogaster segmentation
           protein protein.
          Length = 613

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 72  TPMCIAVIVRLSGPRVSLSAGGGNHVVTSVSLADRSCGLDDLRKYFKKEIYTSVA 126
           TP  ++ +V  SG  V+ S+G  +    S SLA+ S G ++L    K E    +A
Sbjct: 430 TPNSLSAVV--SGAGVTSSSGANSGADPSQSLANASAGSEELSAALKVESVDLIA 482


>AY059447-1|AAL13353.1|  590|Drosophila melanogaster GH22686p
           protein.
          Length = 590

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 72  TPMCIAVIVRLSGPRVSLSAGGGNHVVTSVSLADRSCGLDDLRKYFKKEIYTSVA 126
           TP  ++ +V  SG  V+ S+G  +    S SLA+ S G ++L    K E    +A
Sbjct: 407 TPNSLSAVV--SGAGVTSSSGANSGADPSQSLANASAGSEELSAALKVESVDLIA 459


>AE014134-2152|AAF53160.1|  590|Drosophila melanogaster CG6716-PA,
           isoform A protein.
          Length = 590

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 72  TPMCIAVIVRLSGPRVSLSAGGGNHVVTSVSLADRSCGLDDLRKYFKKEIYTSVA 126
           TP  ++ +V  SG  V+ S+G  +    S SLA+ S G ++L    K E    +A
Sbjct: 407 TPNSLSAVV--SGAGVTSSSGANSGADPSQSLANASAGSEELSAALKVESVDLIA 459


>AE014134-2151|AAN10801.1|  613|Drosophila melanogaster CG6716-PB,
           isoform B protein.
          Length = 613

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 72  TPMCIAVIVRLSGPRVSLSAGGGNHVVTSVSLADRSCGLDDLRKYFKKEIYTSVA 126
           TP  ++ +V  SG  V+ S+G  +    S SLA+ S G ++L    K E    +A
Sbjct: 430 TPNSLSAVV--SGAGVTSSSGANSGADPSQSLANASAGSEELSAALKVESVDLIA 482


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.325    0.141    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,285,797
Number of Sequences: 52641
Number of extensions: 288573
Number of successful extensions: 723
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 722
Number of HSP's gapped (non-prelim): 5
length of query: 135
length of database: 24,830,863
effective HSP length: 78
effective length of query: 57
effective length of database: 20,724,865
effective search space: 1181317305
effective search space used: 1181317305
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)