GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002743-TA|BGIBMGA002743-PA|undefined
         (135 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-13|AAO21393.1|  695|Caenorhabditis elegans Hypothetical...    28   2.6  
AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical...    28   2.6  
AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical...    28   2.6  
AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical ...    28   2.6  
AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical ...    28   2.6  
U88169-8|AAB42237.1|  866|Caenorhabditis elegans Holocentric chr...    26   8.1  
AF321299-1|AAK07638.1|  866|Caenorhabditis elegans CENP-C-like p...    26   8.1  

>AF000263-13|AAO21393.1|  695|Caenorhabditis elegans Hypothetical
           protein T08B2.5g protein.
          Length = 695

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 99  TSVSLADRSCGLDDLRKYFKKEIYTSVAPACALC 132
           +SV LA R   L D+R   ++ +Y      C LC
Sbjct: 483 SSVPLAPRKSTLQDVRDAMERALYDETKKTCMLC 516


>AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical
           protein T08B2.5f protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 99  TSVSLADRSCGLDDLRKYFKKEIYTSVAPACALC 132
           +SV LA R   L D+R   ++ +Y      C LC
Sbjct: 626 SSVPLAPRKSTLQDVRDAMERALYDETKKTCMLC 659


>AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical
           protein T08B2.5c protein.
          Length = 866

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 99  TSVSLADRSCGLDDLRKYFKKEIYTSVAPACALC 132
           +SV LA R   L D+R   ++ +Y      C LC
Sbjct: 654 SSVPLAPRKSTLQDVRDAMERALYDETKKTCMLC 687


>AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical
           protein T08B2.5a protein.
          Length = 924

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 99  TSVSLADRSCGLDDLRKYFKKEIYTSVAPACALC 132
           +SV LA R   L D+R   ++ +Y      C LC
Sbjct: 712 SSVPLAPRKSTLQDVRDAMERALYDETKKTCMLC 745


>AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical
           protein T08B2.5b protein.
          Length = 925

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 99  TSVSLADRSCGLDDLRKYFKKEIYTSVAPACALC 132
           +SV LA R   L D+R   ++ +Y      C LC
Sbjct: 713 SSVPLAPRKSTLQDVRDAMERALYDETKKTCMLC 746


>U88169-8|AAB42237.1|  866|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 4 protein.
          Length = 866

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 1   MSKVDRYDNVAPRRRYREPPVMSLI 25
           M  VD  + V P RRY +P   SL+
Sbjct: 555 MDIVDSVNRVTPARRYEQPTFASLV 579


>AF321299-1|AAK07638.1|  866|Caenorhabditis elegans CENP-C-like
           protein HCP-4 protein.
          Length = 866

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 1   MSKVDRYDNVAPRRRYREPPVMSLI 25
           M  VD  + V P RRY +P   SL+
Sbjct: 555 MDIVDSVNRVTPARRYEQPTFASLV 579


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.141    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,515,807
Number of Sequences: 27539
Number of extensions: 133457
Number of successful extensions: 268
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 7
length of query: 135
length of database: 12,573,161
effective HSP length: 74
effective length of query: 61
effective length of database: 10,535,275
effective search space: 642651775
effective search space used: 642651775
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)