GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002742-TA|BGIBMGA002742-PA|undefined
         (66 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2BCE5 Cluster: Putative uncharacterized protein; n=2; ...    32   1.9  
UniRef50_Q01PJ9 Cluster: Efflux transporter, RND family, MFP sub...    31   3.3  
UniRef50_A5AI74 Cluster: Putative uncharacterized protein; n=1; ...    31   4.4  

>UniRef50_Q2BCE5 Cluster: Putative uncharacterized protein; n=2;
           Bacillus|Rep: Putative uncharacterized protein -
           Bacillus sp. NRRL B-14911
          Length = 744

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 16  VYVLVAPKKKFRWHSSRPLPILDKATQLGKTSPRLFEPQDHR 57
           +Y ++ P+   RW   R +P+LDK  +L + S  LF+  D +
Sbjct: 154 IYRIIRPEGGIRWIQDRGIPVLDKKGRLIEFSSVLFDITDRQ 195


>UniRef50_Q01PJ9 Cluster: Efflux transporter, RND family, MFP
           subunit precursor; n=1; Solibacter usitatus
           Ellin6076|Rep: Efflux transporter, RND family, MFP
           subunit precursor - Solibacter usitatus (strain
           Ellin6076)
          Length = 414

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 8   VRYGRASRVYVLVAPKKKFRWHSSRPLPILDKATQLGKTSPRLFEPQ 54
           VR G+A+ + +   P + FR H S  LP +D AT+  K       P+
Sbjct: 272 VRIGQAAALTLAYLPGRTFRGHVSYILPTIDPATRTVKVRVEFSNPE 318


>UniRef50_A5AI74 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 1031

 Score = 31.1 bits (67), Expect = 4.4
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 28  WHSSRPLPILDKATQLGKTSPR 49
           W  +R LP +DK  Q GKTSPR
Sbjct: 106 WRINRLLPHMDKKNQKGKTSPR 127


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.323    0.133    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,229,265
Number of Sequences: 1657284
Number of extensions: 2032815
Number of successful extensions: 3760
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3757
Number of HSP's gapped (non-prelim): 3
length of query: 66
length of database: 575,637,011
effective HSP length: 46
effective length of query: 20
effective length of database: 499,401,947
effective search space: 9988038940
effective search space used: 9988038940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 65 (30.3 bits)