GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002742-TA|BGIBMGA002742-PA|undefined
         (66 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     24   0.15 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    20   1.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    18   7.4  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    18   9.8  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    18   9.8  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.8 bits (49), Expect = 0.15
 Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 3/30 (10%)

Query: 27  RWHSSRPLPILDKATQLGKTSPRLFEPQDH 56
           R    RPLP+  KA  L   SPR   P DH
Sbjct: 184 RCDPDRPLPLDQKARDL---SPRNGSPTDH 210


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 20.2 bits (40), Expect = 1.8
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 18  VLVAPKKKFRWHSSRPLPILDKATQLGKTSPRLFEPQDHRVLSAATDTS 66
           V + PK++      R  PIL +   +  T+P    P     L+ + D S
Sbjct: 69  VALPPKREIP-SPKRSSPILAEKVSVSPTTPPTPSPPPEERLTPSKDAS 116


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 18.2 bits (35), Expect = 7.4
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 4/28 (14%)

Query: 43  LGKTSPRLFEP--QDHRVLSAAT--DTS 66
           L K SP++ EP    +  +S AT  DTS
Sbjct: 484 LAKLSPKVLEPLYSGNLAVSVATPNDTS 511


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 17.8 bits (34), Expect = 9.8
 Identities = 5/12 (41%), Positives = 10/12 (83%)

Query: 15  RVYVLVAPKKKF 26
           R+Y+++ P K+F
Sbjct: 106 RLYLILRPGKRF 117


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 17.8 bits (34), Expect = 9.8
 Identities = 5/12 (41%), Positives = 10/12 (83%)

Query: 15  RVYVLVAPKKKF 26
           R+Y+++ P K+F
Sbjct: 106 RLYLILRPGKRF 117


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.133    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,231
Number of Sequences: 317
Number of extensions: 476
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 66
length of database: 114,650
effective HSP length: 44
effective length of query: 22
effective length of database: 100,702
effective search space:  2215444
effective search space used:  2215444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.7 bits)
S2: 34 (17.8 bits)