GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002742-TA|BGIBMGA002742-PA|undefined
         (66 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            24   2.2  
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    24   2.2  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    23   3.8  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    23   6.6  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    23   6.6  
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    23   6.6  
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    22   8.7  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    22   8.7  

>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 11  GRASRVYVLVAPKKKFRWHSSRPL--PILD 38
           G A  ++  V P+K+  +HS+  L  P+LD
Sbjct: 299 GMAGLIFAKVTPEKRLLFHSALKLSGPVLD 328


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 28  WHSSRPLPILDKATQLGKTSPRLFEPQDHRVLSAATDTS 66
           W +S+  P+L     L +     F P    ++SA+ DT+
Sbjct: 250 WKASQSTPLLRLEGHLARVGRVAFHPSGDYLVSASFDTT 288


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 24  KKFRWHSSRPLPILDKATQLGKTS---PRLFEPQDHR 57
           KKF W     LP +D+   L   S   P+L E +  R
Sbjct: 714 KKFEWQGVALLPFIDENRLLNAVSKIYPQLTEEESKR 750


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 3   KLCLCVRYGRASRVYVLVAPKKKFRWHSSRPLPILDKATQLGKTSPRLFEPQ 54
           K  L V +  A+R+Y L +  K+  W    P   LD+ T+        F+PQ
Sbjct: 219 KFILSVFHPDAARLYRLCSSLKRICWELYDPSRSLDE-TETDVEVFSCFQPQ 269


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 16  VYVLVAPKKKFRWHSSRPLPILDKATQLGKTSPRL 50
           +Y+L A  ++    + R + IL+KA    KT+ RL
Sbjct: 591 IYLLYADFEEKFGKAKRSISILEKAADKVKTADRL 625


>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 17  YVLVAPKKKFRWHSSRPLPILDKATQLGKTSPR 49
           Y L  P   FR   + PL   D+AT   K SP+
Sbjct: 342 YFLSNPDLPFRLKYNLPLNKWDRATFYTKMSPK 374


>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 28  WHSSRPLPILDKATQLGK 45
           WH     P LD A++LGK
Sbjct: 218 WHEIPIPPTLDLASELGK 235


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 23  KKKFRWHSSRPLPILDKATQLGKTSPRLFEPQDH 56
           +++  WHS     +     Q  K   RL EP  H
Sbjct: 236 RERLEWHSMLSSVLKGDVMQTEKRRLRLTEPDGH 269


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.133    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 282,948
Number of Sequences: 5004
Number of extensions: 8465
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 8
length of query: 66
length of database: 2,362,478
effective HSP length: 46
effective length of query: 20
effective length of database: 2,132,294
effective search space: 42645880
effective search space used: 42645880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 45 (22.2 bits)