GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002742-TA|BGIBMGA002742-PA|undefined
         (66 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0866 - 32331629-32334328                                         27   1.4  
10_01_0185 + 2069800-2070672                                           26   4.3  
07_01_0391 - 2967823-2967975,2968773-2968961                           25   7.6  

>02_05_0866 - 32331629-32334328
          Length = 899

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 11  GRASRVYVLV--APKKKFRWHSSRPLPILDKATQLGKTS 47
           G+  R Y+ V  AP K   W ++R  PI D+A  L  T+
Sbjct: 65  GQQDRYYLAVVHAPSKTCVWVANRDAPITDRAAPLRLTA 103


>10_01_0185 + 2069800-2070672
          Length = 290

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 10  YGRASRVYVLVAPKKKFRWHSSRPLP 35
           Y  A RV VLV    ++ W  + PLP
Sbjct: 117 YAAAQRVRVLVMSSARWSWKRNPPLP 142


>07_01_0391 - 2967823-2967975,2968773-2968961
          Length = 113

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 44 GKTSPRLFEPQDHRVLSAATDTS 66
          G+T+ + F P+D+R LS+ T T+
Sbjct: 62 GRTARQSFHPKDYRGLSSMTRTT 84


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.133    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,863,727
Number of Sequences: 37544
Number of extensions: 58021
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 3
length of query: 66
length of database: 14,793,348
effective HSP length: 46
effective length of query: 20
effective length of database: 13,066,324
effective search space: 261326480
effective search space used: 261326480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)