GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002741-TA|BGIBMGA002741-PA|undefined
         (53 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    25   1.2  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    25   1.6  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    22   8.5  

>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 13  HVRRAVKLQTAIYFWVATRQMDNAKVPSKN 42
           H R+  + Q  I  W+A R+ +NA   ++N
Sbjct: 271 HQRQLAREQAKIQQWIAKRKAENANRAAEN 300


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)

Query: 20  LQTAIYFWVATRQMDNAKVPSKN 42
           L+  + +W+ TR + N ++P+KN
Sbjct: 270 LELILSYWIPTRILVNHQLPTKN 292


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 31  RQMDNAKVPSKNHTKDV 47
           R  DNA + +KNH K++
Sbjct: 507 RANDNASINNKNHHKEL 523


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.131    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,235
Number of Sequences: 5004
Number of extensions: 6058
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 53
length of database: 2,362,478
effective HSP length: 34
effective length of query: 19
effective length of database: 2,192,342
effective search space: 41654498
effective search space used: 41654498
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)