GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002741-TA|BGIBMGA002741-PA|undefined
         (53 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-10|CAB03395.3|  467|Caenorhabditis elegans Hypothetical p...    25   6.4  
Z81033-3|CAD36479.1|  467|Caenorhabditis elegans Hypothetical pr...    25   6.4  
AL023824-1|CAD36497.1|  467|Caenorhabditis elegans Hypothetical ...    25   6.4  
AF487547-1|AAL93258.1|  467|Caenorhabditis elegans ARID DNA bind...    25   6.4  

>Z81128-10|CAB03395.3|  467|Caenorhabditis elegans Hypothetical
           protein T23D8.8 protein.
          Length = 467

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 7   IPARSPHVRRAVKLQTAIYFWVATRQMDNAK 37
           IPA+ P +   VK   A    ++T+  DN+K
Sbjct: 409 IPAKRPKLENDVKTNGASSMRISTKHSDNSK 439


>Z81033-3|CAD36479.1|  467|Caenorhabditis elegans Hypothetical
           protein T23D8.8 protein.
          Length = 467

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 7   IPARSPHVRRAVKLQTAIYFWVATRQMDNAK 37
           IPA+ P +   VK   A    ++T+  DN+K
Sbjct: 409 IPAKRPKLENDVKTNGASSMRISTKHSDNSK 439


>AL023824-1|CAD36497.1|  467|Caenorhabditis elegans Hypothetical
           protein T23D8.8 protein.
          Length = 467

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 7   IPARSPHVRRAVKLQTAIYFWVATRQMDNAK 37
           IPA+ P +   VK   A    ++T+  DN+K
Sbjct: 409 IPAKRPKLENDVKTNGASSMRISTKHSDNSK 439


>AF487547-1|AAL93258.1|  467|Caenorhabditis elegans ARID DNA binding
           protein CFI-1 protein.
          Length = 467

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 7   IPARSPHVRRAVKLQTAIYFWVATRQMDNAK 37
           IPA+ P +   VK   A    ++T+  DN+K
Sbjct: 409 IPAKRPKLENDVKTNGASSMRISTKHSDNSK 439


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.131    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,282,646
Number of Sequences: 27539
Number of extensions: 31235
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 4
length of query: 53
length of database: 12,573,161
effective HSP length: 34
effective length of query: 19
effective length of database: 11,636,835
effective search space: 221099865
effective search space used: 221099865
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)