GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002740-TA|BGIBMGA002740-PA|undefined
         (132 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   1.3  
SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II precursor|Sc...    25   2.9  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   5.1  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    24   6.8  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    24   9.0  

>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 69  LQDRLSLLEEQHLALRSAVLEPQQPLV-ERLRREALSRPLYWRPRRSIR 116
           L+DR S + +  L+  S+VLE Q  +  ER +R +L+  L      SIR
Sbjct: 756 LRDRSSAISDLSLSTASSVLEAQSLITPERPKRPSLNEKLLSLDGTSIR 804


>SPBC1105.05 |exg1||glucan 1,3-beta-glucosidase I/II
          precursor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 38 PSDPWAYCVVLWCACAMSLISSGYSLY 64
          P+D W +C VL    A S +++ YS +
Sbjct: 69 PTDEWGFCEVLGADEAASQLAAHYSSF 95


>SPAC23H3.02c |ini1||RING finger-like protein
          Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 8/8 (100%), Positives = 8/8 (100%)

Query: 31 ERCDEKCP 38
          ERCDEKCP
Sbjct: 24 ERCDEKCP 31


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 71  DRLSLLEEQHL--ALRSAVLEPQQPLVERLRREALSRPLYWRPRRSIRDYG 119
           + LS+ E+  +   L S + E Q P V+ LR E L   +    +R    YG
Sbjct: 63  ENLSMNEKYQVFVVLNSLMSEDQDPFVQFLRHEDLLSVMQMISKRDSTPYG 113


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 2/23 (8%)

Query: 40  DPWAYCVVLWCA-CAMSLISSGY 61
           D W Y  V WCA C M  IS  Y
Sbjct: 135 DEWVYFAV-WCASCLMIFISLWY 156


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.137    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 507,941
Number of Sequences: 5004
Number of extensions: 16061
Number of successful extensions: 33
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 5
length of query: 132
length of database: 2,362,478
effective HSP length: 66
effective length of query: 66
effective length of database: 2,032,214
effective search space: 134126124
effective search space used: 134126124
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 49 (23.8 bits)