Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002740-TA|BGIBMGA002740-PA|undefined
(132 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0633 + 20120560-20123464,20123608-20123672 28 2.8
05_05_0343 - 24234026-24234235,24234254-24234502,24234642-242349... 28 2.8
03_04_0167 + 17936598-17936763,17938735-17938831,17938919-179390... 27 3.7
11_04_0161 - 14270233-14271747 27 4.9
09_04_0558 - 18504639-18505718 27 6.5
08_02_1550 - 27818271-27818618,27818743-27818955,27819079-278195... 27 6.5
03_06_0250 + 32645600-32646649,32647549-32647791,32648008-326482... 27 6.5
03_02_0979 + 12897107-12897352 27 6.5
12_02_0552 + 20333744-20334114,20334241-20335942 26 8.6
11_01_0700 + 5764149-5764979 26 8.6
06_03_1062 - 27293119-27293313,27293390-27293548,27293877-272941... 26 8.6
04_03_0736 - 19145428-19145474,19145608-19145721,19146707-191478... 26 8.6
>07_03_0633 + 20120560-20123464,20123608-20123672
Length = 989
Score = 27.9 bits (59), Expect = 2.8
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 50 CACAMSLISSGYSLYKQQGLQDRLSLLEEQHLALRSAVLEPQQPLVERLRREALSRPLYW 109
C C S+ SGY K + ++ +QH + + E ++ + L R + +P W
Sbjct: 411 CLCYCSIFPSGYLFEKNMLIHMWIASFMQQHDGI--GMKEMEKEWFDELFRRSFFQPTIW 468
Query: 110 RPRRSIRD 117
+ R + D
Sbjct: 469 KNRYIMPD 476
>05_05_0343 -
24234026-24234235,24234254-24234502,24234642-24234959,
24235111-24235371,24235457-24235534,24235834-24236262
Length = 514
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 52 CAMSLISSG--YSLYKQQGLQDRLSLLEEQHLALRSAVL 88
C + L+ G ++ YK QGL SL+EE L L +++L
Sbjct: 295 CDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATSLL 333
>03_04_0167 +
17936598-17936763,17938735-17938831,17938919-17939027,
17939125-17939163,17939655-17939768,17939886-17939947,
17940691-17940793,17942111-17942260,17942693-17942761,
17942840-17942896,17942966-17943226,17946154-17946222,
17946374-17946475,17947200-17947270,17947375-17947578,
17947848-17947941,17948350-17948646
Length = 687
Score = 27.5 bits (58), Expect = 3.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 72 RLSLLEEQHLALRSAVLEPQQPLVERLRREALS 104
R+ L EQHL + VLE +Q L + R LS
Sbjct: 302 RMGLEIEQHLQRNARVLEKRQALYDEFMRNGLS 334
>11_04_0161 - 14270233-14271747
Length = 504
Score = 27.1 bits (57), Expect = 4.9
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 86 AVLEPQQPLVERLRR--EALSRPLYWRPRRSIRDYGDCG 122
AVL P+Q +E +R E RP W RR RD G G
Sbjct: 305 AVLSPRQ--LEEIRHCLEVTGRPFLWVVRRDSRDGGGGG 341
>09_04_0558 - 18504639-18505718
Length = 359
Score = 26.6 bits (56), Expect = 6.5
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 61 YSLYKQQGLQDRLSLLEEQHLALRSAVLEPQQPLVERLRREALSRPLYWRPRRSIR 116
Y+ + L+ +L L E + + S+V +P P E +A S PLY+ R IR
Sbjct: 230 YAAEDEAELRLKLELEEPERIVPWSSV-DPYPPSPEEAAAQASSFPLYFEGPRPIR 284
>08_02_1550 -
27818271-27818618,27818743-27818955,27819079-27819597,
27820239-27820357,27820457-27820763,27820840-27820922,
27821027-27821204,27821328-27821401,27822078-27822293,
27822724-27822757
Length = 696
Score = 26.6 bits (56), Expect = 6.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 65 KQQGLQDRLSLLEEQHLALRSAVLEPQQPL 94
+++ L D + L +QH S V+EP++PL
Sbjct: 613 RERALLDNKARLHQQHQLPSSTVVEPKKPL 642
>03_06_0250 +
32645600-32646649,32647549-32647791,32648008-32648229,
32648375-32648443,32650681-32650768,32651147-32651230,
32651494-32651582,32651933-32652046,32652513-32652647,
32652847-32653071
Length = 772
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 57 ISSGYSLYKQQGLQDRLSLLEEQHL 81
IS GYSL +++ L DRL L E L
Sbjct: 660 ISDGYSLMRRRLLNDRLLLAERSFL 684
>03_02_0979 + 12897107-12897352
Length = 81
Score = 26.6 bits (56), Expect = 6.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 73 LSLLEEQHLALRSAVLEPQQPLVERL 98
LSLL H++LR L P+QP + R+
Sbjct: 36 LSLLLRYHVSLRRPTLWPRQPFLPRV 61
>12_02_0552 + 20333744-20334114,20334241-20335942
Length = 690
Score = 26.2 bits (55), Expect = 8.6
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 58 SSGYSLYKQQGLQDRLSLLEEQHLALRSAV--LEPQQPLVERLRREALSRPL 107
SS L K+QG DRL+ L + A+R+A L PQ ++ R +++ R +
Sbjct: 318 SSYMRLAKEQGELDRLTKLRQDRYAIRTAPQWLGPQVEVI-RFATKSIEREI 368
>11_01_0700 + 5764149-5764979
Length = 276
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 88 LEPQQPLVERLRREALSRPLYWRP 111
L+P+ PLV RR+A+ P WRP
Sbjct: 230 LQPRGPLVAHRRRDAVRAP-PWRP 252
>06_03_1062 -
27293119-27293313,27293390-27293548,27293877-27294194,
27294535-27294795,27294901-27294978,27295707-27295901
Length = 401
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 61 YSLYKQQGLQDRLSLLEEQHLALRSAVLE 89
Y+ YK QG SL+EE L L ++++E
Sbjct: 228 YTFYKAQGYAVGKSLVEEDKLELATSLIE 256
>04_03_0736 -
19145428-19145474,19145608-19145721,19146707-19147870,
19150251-19150383
Length = 485
Score = 26.2 bits (55), Expect = 8.6
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 71 DRLSLLEEQHLALRSAVLEPQQPLVERLRREALSRP 106
D LS +E HLA A+ PQ L + LR E L+ P
Sbjct: 57 DALSRRDE-HLAEALALSAPQFSLFDELRHEVLTSP 91
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.137 0.449
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,692,995
Number of Sequences: 37544
Number of extensions: 119494
Number of successful extensions: 290
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 12
length of query: 132
length of database: 14,793,348
effective HSP length: 75
effective length of query: 57
effective length of database: 11,977,548
effective search space: 682720236
effective search space used: 682720236
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)
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