GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002740-TA|BGIBMGA002740-PA|undefined
         (132 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   0.84 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   2.6  
AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex det...    21   4.5  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 0.84
 Identities = 20/80 (25%), Positives = 31/80 (38%)

Query: 36  KCPSDPWAYCVVLWCACAMSLISSGYSLYKQQGLQDRLSLLEEQHLALRSAVLEPQQPLV 95
           K P+      +VL    + S +  G S Y     Q R + LE +       V+E Q    
Sbjct: 174 KAPAQIPVDVLVLTVTLSASAMVLGLSSYSLTEFQQRRAFLETRQSLEVQLVIEEQSTEQ 233

Query: 96  ERLRREALSRPLYWRPRRSI 115
           ERL    L   +  + R+ +
Sbjct: 234 ERLLLSVLPEHVAVKMRQDL 253



 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 43  AYCVVLWCACAMSLISSGYSLYK 65
           ++CVVL C+ A   + S   L K
Sbjct: 152 SFCVVLACSTATVYVMSVVGLSK 174


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 14/53 (26%), Positives = 22/53 (41%)

Query: 74  SLLEEQHLALRSAVLEPQQPLVERLRREALSRPLYWRPRRSIRDYGDCGCPAD 126
           SLL   H  L  +++E  +   E+L+R  +      R   S R       PA+
Sbjct: 697 SLLSSTHSTLARSLMEGPRMTAEQLKRTDIIHNYIMRGEASPRSPNASPSPAE 749


>AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 4.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 64  YKQQGLQDRLSLLEEQHLALRSA 86
           YK+    D+L  +EE+HL  R++
Sbjct: 261 YKKDRRYDQLHNVEEKHLRERTS 283


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.137    0.449 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,107
Number of Sequences: 429
Number of extensions: 1023
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 132
length of database: 140,377
effective HSP length: 52
effective length of query: 80
effective length of database: 118,069
effective search space:  9445520
effective search space used:  9445520
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)