Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002739-TA|BGIBMGA002739-PA|IPR005520|Attacin, N-terminal
region, IPR005521|Attacin, C-terminal region
         (214 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117134-1|AAI17135.1| 1709|Homo sapiens chromodomain helicase D...    31   2.3  
AF006513-1|AAB87381.1| 1709|Homo sapiens CHD1 protein.                 31   2.3  

>BC117134-1|AAI17135.1| 1709|Homo sapiens chromodomain helicase DNA
           binding protein 1 protein.
          Length = 1709

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 77  ALDNINGHGLS----LTGTRIPGFGEQLGVAGKVNLFH---NNNHDLSAKAFAIRNSPSA 129
           ALD+ N  G      L  TR  G G  L  A  V +F    N  +DL A+A A R     
Sbjct: 846 ALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKK 905

Query: 130 IPNAPNFNTLGGGLDYMFKQKVGASLSAAHSDVINRNDYSAGGKLNLFQSPSSSLDFN 187
             N     T G  ++    ++    +   H  VI R D +    L+   +PSSS  FN
Sbjct: 906 QVNIYRLVTKGS-VEEDILERAKKKMVLDHL-VIQRMDTTGKTVLHTGSAPSSSTPFN 961


>AF006513-1|AAB87381.1| 1709|Homo sapiens CHD1 protein.
          Length = 1709

 Score = 31.5 bits (68), Expect = 2.3
 Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 9/118 (7%)

Query: 77  ALDNINGHGLS----LTGTRIPGFGEQLGVAGKVNLFH---NNNHDLSAKAFAIRNSPSA 129
           ALD+ N  G      L  TR  G G  L  A  V +F    N  +DL A+A A R     
Sbjct: 846 ALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKK 905

Query: 130 IPNAPNFNTLGGGLDYMFKQKVGASLSAAHSDVINRNDYSAGGKLNLFQSPSSSLDFN 187
             N     T G  ++    ++    +   H  VI R D +    L+   +PSSS  FN
Sbjct: 906 QVNIYRLVTKGS-VEEDILERAKKKMVLDHL-VIQRMDTTGKTVLHTGSAPSSSTPFN 961


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.315    0.131    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,531,157
Number of Sequences: 224733
Number of extensions: 1115271
Number of successful extensions: 1857
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1857
Number of HSP's gapped (non-prelim): 2
length of query: 214
length of database: 73,234,838
effective HSP length: 87
effective length of query: 127
effective length of database: 53,683,067
effective search space: 6817749509
effective search space used: 6817749509
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)