GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002739-TA|BGIBMGA002739-PA|IPR005520|Attacin, N-terminal
region, IPR005521|Attacin, C-terminal region
         (214 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   0.79 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   0.79 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   0.79 

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 110 HNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGG 142
           H+   D+S+      N+PSA  N  NFN    G
Sbjct: 115 HDEIPDISSTRGNNNNTPSATNNNTNFNNNSNG 147


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 110 HNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGG 142
           H+   D+S+      N+PSA  N  NFN    G
Sbjct: 63  HDEIPDISSTRGNNNNTPSATNNNTNFNNNSNG 95


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 110 HNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGG 142
           H+   D+S+      N+PSA  N  NFN    G
Sbjct: 246 HDEIPDISSTRGNNNNTPSATNNNTNFNNNSNG 278


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.131    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,612
Number of Sequences: 317
Number of extensions: 2013
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 214
length of database: 114,650
effective HSP length: 54
effective length of query: 160
effective length of database: 97,532
effective search space: 15605120
effective search space used: 15605120
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)