GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002739-TA|BGIBMGA002739-PA|IPR005520|Attacin, N-terminal
region, IPR005521|Attacin, C-terminal region
         (214 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016     30   1.2  
08_02_1267 + 25728324-25728407,25728436-25728502,25728753-257288...    29   2.8  
11_01_0458 + 3536162-3537794,3537905-3538272                           28   5.0  

>04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016
          Length = 360

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 61  ADFNDRHKLSAASAGLALDNINGHGLSLTGTRIPGFGEQLGVAGKVNL 108
           A  N+R + S AS  +A  + + HG+ + G   P +G     AG ++L
Sbjct: 173 AGHNERRRRSNASEAMARGSAHPHGMPVLGHGFPPYGLPTSSAGALSL 220


>08_02_1267 +
           25728324-25728407,25728436-25728502,25728753-25728828,
           25729388-25729450,25729640-25729896,25731299-25731440,
           25731524-25732017,25732398-25732536,25733805-25733876,
           25733960-25734040,25734677-25734843,25734942-25735147,
           25735301-25735427,25735515-25735639
          Length = 699

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 2/78 (2%)

Query: 87  SLTGTRIPGFGEQLGVAGKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGGLDYM 146
           S+T     GF E  G+   V+L +    DL+ +   IR  P+   N   F +L  GLD  
Sbjct: 129 SITYVGDEGFIEA-GINHNVDLNNLQQTDLARRYSTIRFFPNGTRNCYTFKSLTPGLDLR 187

Query: 147 -FKQKVGASLSAAHSDVI 163
            F++K+    +  H+ V+
Sbjct: 188 PFQEKIYPGSNMTHALVL 205


>11_01_0458 + 3536162-3537794,3537905-3538272
          Length = 666

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 92  RIPGFGEQLGVAGKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGGGLDYMF---K 148
           +IP  G QL +    N+ +NN H +     AI + PS I    ++N L G L       K
Sbjct: 106 QIPSLGNQLQMLQIFNVLYNNLHGVIPN--AIFSLPSLIQVDLSYNNLHGQLPIDIGNAK 163

Query: 149 QKVGASLSA--AHSDVIN 164
           Q V   LS+     D++N
Sbjct: 164 QLVSLKLSSNKLSGDILN 181


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.131    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,385,681
Number of Sequences: 37544
Number of extensions: 277107
Number of successful extensions: 527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 3
length of query: 214
length of database: 14,793,348
effective HSP length: 79
effective length of query: 135
effective length of database: 11,827,372
effective search space: 1596695220
effective search space used: 1596695220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)