GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002739-TA|BGIBMGA002739-PA|IPR005520|Attacin, N-terminal
region, IPR005521|Attacin, C-terminal region
         (214 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.            23   5.2  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    23   6.9  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    23   6.9  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    23   9.2  
AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.       23   9.2  
AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.       23   9.2  
AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.       23   9.2  

>AJ010299-1|CAA09070.1|  722|Anopheles gambiae stat protein.
          Length = 722

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 130 IPNAPNFNTLGGGLDYMFKQKVGASLSAAHSDVINRNDYSAGGKLNLFQSPSSSLDFNAG 189
           +PN   +N L   +   F  +VG  L+  +   + R  Y    KL+   S    + F A 
Sbjct: 457 VPNLIPWNRLVEAISMTFSARVGRGLTDENMQYMYRKAYR--DKLSFSVSNDQMISF-AQ 513

Query: 190 FKKFDTP 196
           F K  TP
Sbjct: 514 FCKDTTP 520


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 104 GKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNFNTLGG 141
           GK N  +NNN++  +   A  NS S+     N + L G
Sbjct: 95  GKTNNNNNNNNNNGSNTGATVNSGSSNAALSNSSVLNG 132


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 6.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 137 NTLGGGLDYMFKQKVGASLSAAHSDV 162
           N+L G   Y+    VGA L   H DV
Sbjct: 917 NSLNGRWTYLLIPDVGAWLDRKHGDV 942


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 36  DGTSGAALKVPLTGNDKNVLSAIGSADFNDRHKLSAASAGLAL 78
           D T    ++  LT  D ++  +    D +D H L  A+  L +
Sbjct: 348 DSTDETLIEEELTDTDSSMCDSTNEDDGDDGHTLERAAEELTV 390


>AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 36  DGTSGAALKVPLTGNDKNVLSAIGSADFNDRHKLSAASAGLAL 78
           D T    ++  LT  D ++  +    D +D H L  A+  L +
Sbjct: 118 DSTDETLIEEELTDTDSSMCDSTNEDDGDDGHTLERAAEELTV 160


>AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.
          Length = 215

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 36  DGTSGAALKVPLTGNDKNVLSAIGSADFNDRHKLSAASAGLAL 78
           D T    ++  LT  D ++  +    D +D H L  A+  L +
Sbjct: 124 DSTDETLIEEELTDTDSSMCDSTNEDDGDDGHTLERAAEELTV 166


>AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 36  DGTSGAALKVPLTGNDKNVLSAIGSADFNDRHKLSAASAGLAL 78
           D T    ++  LT  D ++  +    D +D H L  A+  L +
Sbjct: 118 DSTDETLIEEELTDTDSSMCDSTNEDDGDDGHTLERAAEELTV 160


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.131    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,958
Number of Sequences: 2123
Number of extensions: 8297
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 7
length of query: 214
length of database: 516,269
effective HSP length: 61
effective length of query: 153
effective length of database: 386,766
effective search space: 59175198
effective search space used: 59175198
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)