GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002739-TA|BGIBMGA002739-PA|IPR005520|Attacin, N-terminal
region, IPR005521|Attacin, C-terminal region
         (214 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    25   0.54 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   6.6  

>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 103 AGKVNLFHNNNHDLSAKAFAIRNSPSAIPNAPNFNTL 139
           +G++N+  +++HD S + +A  + P  I + PN + L
Sbjct: 68  SGQLNII-SSDHDDSDEEYAANSQPPRITSVPNTSRL 103


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 73  SAGLALDNINGHGLSLTGTRIPGFGEQL 100
           ++ LA+  +N H   + GTR+PG    L
Sbjct: 289 ASALAVVTLNLHHRGVRGTRVPGIVRSL 316


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 160 SDVINRNDYSAGGKLNLFQSPSSSLDFN 187
           +D INR +YSA   L  +    ++L+ N
Sbjct: 126 NDYINRLNYSAFVNLTAYYDGGANLNLN 153


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 127 PSAIPNAPNFNTLGGGLDYMFKQKVGASLSAAHSDV 162
           PS I + P   T+GGG     ++  G+  +A  + V
Sbjct: 272 PSLIDDEPTEVTIGGGGTTSSRRTTGSRAAATTTTV 307


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,660
Number of Sequences: 429
Number of extensions: 2325
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 214
length of database: 140,377
effective HSP length: 55
effective length of query: 159
effective length of database: 116,782
effective search space: 18568338
effective search space used: 18568338
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 42 (21.0 bits)