Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002738-TA|BGIBMGA002738-PA|undefined
(87 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 28 0.22
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.22
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c... 25 1.2
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ... 25 2.1
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 24 2.7
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 23 4.7
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 23 6.3
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 23 8.3
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 23 8.3
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 23 8.3
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 23 8.3
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual 23 8.3
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 27.9 bits (59), Expect = 0.22
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 36 YRQHCLEQRVIALEEKLKDLERTVQQPIVSKKESELLRREKRD 78
YR C + + EE K L + P +SKK +E +R++K+D
Sbjct: 301 YRLGCAQGLLKNFEESEKALAKAGNDPAISKKLAE-IRQKKKD 342
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 27.9 bits (59), Expect = 0.22
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 41 LEQRVIALEEKLKDLERTVQQPIVS 65
+E RVI LEE+L L++ QP +S
Sbjct: 555 IESRVIRLEERLNMLQKLSMQPAIS 579
>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 1.2
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 9 GREENVLNKVVLWCCCGFFFVLCGYG 34
G+ +N + +L+CC G + + G G
Sbjct: 24 GQFQNFIASCILFCCPGIYLAVTGLG 49
>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 437
Score = 24.6 bits (51), Expect = 2.1
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 2 ANPKRQEGREENVLNKVVLWCCCGFFFVLCGYGLYRQHCLEQRVIALEEKLKDLERTVQQ 61
AN KR E N+LNK F +L G + I L++++ DL+ Q
Sbjct: 239 ANEKRMSKEERNLLNKTK-----AFARLLTGPDYQKFVNSYHEQITLKKQISDLQEWRQM 293
Query: 62 PIVSKKESELLRREK 76
+ + ++ R+K
Sbjct: 294 GLTTLEQGHKYERDK 308
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 24.2 bits (50), Expect = 2.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 42 EQRVIALEEKLKDLERTVQQPIVSKKESELLRRE 75
E+R+ LE++ +DL+R +++ V E L R+
Sbjct: 112 EKRISILEKEKEDLQRKMEELTVESMEVVRLTRQ 145
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 23.4 bits (48), Expect = 4.7
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 41 LEQRVIALEEKLKDLERTVQQPIVSKKESELLRRE 75
L + L+EK+ L+R +++ +S+L++R+
Sbjct: 277 LRNELSKLDEKILSLQRETDDVNIAQNKSKLIQRD 311
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 23.0 bits (47), Expect = 6.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 49 EEKLKDLERTVQQPIVSKKESELLRREKRDAECNCPA 85
EE DL ++KK S ++ KR+ +CPA
Sbjct: 125 EEWEDDLASNSSPASIAKKTSRDSKKRKREDLVHCPA 161
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 22.6 bits (46), Expect = 8.3
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 42 EQRVIALEEKLKDLERTVQQPIVSKKESELLRREKRDAE 80
EQR+ EEK + LE ++ + K+E E RRE + E
Sbjct: 690 EQRLREEEEK-RILEERKRREKLDKEEEERRRRELLEKE 727
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 22.6 bits (46), Expect = 8.3
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 48 LEEKLKDLERTVQQPIVSKKESELLRREKRDAE 80
LE+K + ER + +++ EL+ +EK++ E
Sbjct: 118 LEKKRIEAERQRLKDEEERRKKELMEKEKKEKE 150
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 22.6 bits (46), Expect = 8.3
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 40 CLEQRVIALEEKLKDLERTVQQPIVS 65
C++ RV A+++KL +LE + + ++S
Sbjct: 170 CMDGRVKAIKQKLVELELSHKVCVIS 195
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 22.6 bits (46), Expect = 8.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 35 LYRQHCLEQRVIALEEKLKDLERT 58
L ++ CLE+R+ + E K L RT
Sbjct: 763 LIQKACLEERIERVYELTKTLRRT 786
>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 22.6 bits (46), Expect = 8.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 34 GLYRQHCLEQRVIALEEKLKDL 55
G+Y +C+ L EK+K+L
Sbjct: 100 GIYEIYCIGDSFTRLHEKMKEL 121
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.323 0.139 0.439
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 394,170
Number of Sequences: 5004
Number of extensions: 13860
Number of successful extensions: 56
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 13
length of query: 87
length of database: 2,362,478
effective HSP length: 61
effective length of query: 26
effective length of database: 2,057,234
effective search space: 53488084
effective search space used: 53488084
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 46 (22.6 bits)
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