GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002738-TA|BGIBMGA002738-PA|undefined
         (87 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   0.41 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   0.96 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   0.96 
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    20   3.9  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    20   3.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 0.41
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 37  RQHCLEQRVIALEEKLKDLERTVQQ 61
           R   L  RV+ALE + K+L + + Q
Sbjct: 340 RTRHLSDRVVALEAEKKNLSKVIDQ 364


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 0.96
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 20  LWCCCGFFFVLCGYGLYRQHC 40
           +W C  FFF+L   GL  Q C
Sbjct: 375 IWSCL-FFFMLILIGLDSQFC 394


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 0.96
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 20  LWCCCGFFFVLCGYGLYRQHC 40
           +W C  FFF+L   GL  Q C
Sbjct: 428 IWSCL-FFFMLILIGLDSQFC 447


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 34  GLYRQHCLEQRV 45
           G Y+QH L+ RV
Sbjct: 112 GAYKQHYLQNRV 123


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 20.2 bits (40), Expect = 3.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 34  GLYRQHCLEQRV 45
           G Y+QH L+ RV
Sbjct: 112 GAYKQHYLQNRV 123


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.139    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,314
Number of Sequences: 429
Number of extensions: 1152
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 87
length of database: 140,377
effective HSP length: 48
effective length of query: 39
effective length of database: 119,785
effective search space:  4671615
effective search space used:  4671615
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.1 bits)
S2: 37 (19.0 bits)