GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002737-TA|BGIBMGA002737-PA|undefined
         (335 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    33   0.003
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    33   0.003
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    33   0.003
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.6  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 158 NPKKIPDGEENNLAHFENNRNEVYAEVDSNKHNILNERTYEVTEDTELDQNVGTTNNPLN 217
           N    P    NN  +F NN N   +   S+  + L E      EDT L  +   T    N
Sbjct: 127 NNNNTPSATNNN-TNFNNNSNGASSVGSSSPFDKLIEEDSRSNEDTSLHPSPRITKK-AN 184

Query: 218 YIHEKPENDLREGSLNTTAKLQDILSKYGININDDLPNYALSRRLTRSMP 267
            +  K EN  R  S N+  K +  LSK     + D  N  LS +   S+P
Sbjct: 185 SVSVKVEN--RRNSPNSCEK-KIGLSKISPKESQDAANVKLSPKSASSLP 231



 Score = 25.4 bits (53), Expect = 0.59
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 154 RYDRNPKKIPDGEENNLAHFENNRNEVYAEVDSNKHNILNERTYEVTEDTELDQNVGTTN 213
           +Y  N +   D  ++   H++ N+N    E+ + +H  +NE    V   T   Q V   +
Sbjct: 287 QYQMNQEYRTD-RKHTQQHYQMNQNMYPGEMYNPEHTTVNEAQPYVRNTTVPTQGVARMS 345

Query: 214 NPLNYIHEKPE 224
               Y +  P+
Sbjct: 346 RGRQYNYPNPQ 356


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 158 NPKKIPDGEENNLAHFENNRNEVYAEVDSNKHNILNERTYEVTEDTELDQNVGTTNNPLN 217
           N    P    NN  +F NN N   +   S+  + L E      EDT L  +   T    N
Sbjct: 75  NNNNTPSATNNN-TNFNNNSNGASSVGSSSPFDKLIEEDSRSNEDTSLHPSPRITKK-AN 132

Query: 218 YIHEKPENDLREGSLNTTAKLQDILSKYGININDDLPNYALSRRLTRSMP 267
            +  K EN  R  S N+  K +  LSK     + D  N  LS +   S+P
Sbjct: 133 SVSVKVEN--RRNSPNSCEK-KIGLSKISPKESQDAANVKLSPKSASSLP 179



 Score = 25.4 bits (53), Expect = 0.59
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 154 RYDRNPKKIPDGEENNLAHFENNRNEVYAEVDSNKHNILNERTYEVTEDTELDQNVGTTN 213
           +Y  N +   D  ++   H++ N+N    E+ + +H  +NE    V   T   Q V   +
Sbjct: 235 QYQMNQEYRTD-RKHTQQHYQMNQNMYPGEMYNPEHTTVNEAQPYVRNTTVPTQGVARMS 293

Query: 214 NPLNYIHEKPE 224
               Y +  P+
Sbjct: 294 RGRQYNYPNPQ 304


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 33.1 bits (72), Expect = 0.003
 Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 5/110 (4%)

Query: 158 NPKKIPDGEENNLAHFENNRNEVYAEVDSNKHNILNERTYEVTEDTELDQNVGTTNNPLN 217
           N    P    NN  +F NN N   +   S+  + L E      EDT L  +   T    N
Sbjct: 258 NNNNTPSATNNN-TNFNNNSNGASSVGSSSPFDKLIEEDSRSNEDTSLHPSPRITKK-AN 315

Query: 218 YIHEKPENDLREGSLNTTAKLQDILSKYGININDDLPNYALSRRLTRSMP 267
            +  K EN  R  S N+  K +  LSK     + D  N  LS +   S+P
Sbjct: 316 SVSVKVEN--RRNSPNSCEK-KIGLSKISPKESQDAANVKLSPKSASSLP 362



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 154 RYDRNPKKIPDGEENNLAHFENNRNEVYAEVDSNKHNILNERTYEVTEDTELDQNV 209
           +Y  N +   D  ++   H++ N+N    E+ + +H  +NE    V   T   Q V
Sbjct: 418 QYQMNQEYRTD-RKHTQQHYQMNQNMYPGEMYNPEHTTVNEAQPYVRNTTVPTQGV 472


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 5/12 (41%), Positives = 11/12 (91%)

Query: 40  WIPITDPEKYVQ 51
           W P+T+P++Y++
Sbjct: 431 WSPLTNPKQYME 442


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.135    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,018
Number of Sequences: 317
Number of extensions: 3994
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 7
length of query: 335
length of database: 114,650
effective HSP length: 57
effective length of query: 278
effective length of database: 96,581
effective search space: 26849518
effective search space used: 26849518
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)