GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002737-TA|BGIBMGA002737-PA|undefined
         (335 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   0.40 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.70 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.5  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 33  IVKNNNDWIPITDPEKYVQRGQ 54
           I K+ +DW   ++  K+VQ+GQ
Sbjct: 492 IFKDKSDWFDYSEVSKWVQKGQ 513


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 11/55 (20%), Positives = 27/55 (49%)

Query: 185 DSNKHNILNERTYEVTEDTELDQNVGTTNNPLNYIHEKPENDLREGSLNTTAKLQ 239
           +  K + ++E     T+ ++  ++ GT    +NY++   +  L +G L    K++
Sbjct: 212 EKKKEDEIDEGKESKTKLSQWRKDGGTVKKKVNYVYRSVDQVLEDGKLKPNKKVR 266


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 17  HLSFKLNNVDASIEYGIVKNNNDWIPITDPEKYVQRGQSGDG 58
           +   KL+N D S+E G +  NN  I  T+   Y+    +G G
Sbjct: 723 YTDLKLSNPDISVEDGTLSINN--IQKTNEGYYLCEAVNGIG 762


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 48  KYVQRGQSGDGEVKPYHELNKEAEFLKKIVHRDTMNDEKYTALRQSRNMRSKCKDLGDAL 107
           KY +R +    + +   E ++E + +  + ++   N+  Y     + N  +   +  +  
Sbjct: 291 KYRERSKERSRD-RTERERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNY 349

Query: 108 LKYYFNIAN 116
            K Y+NI N
Sbjct: 350 KKLYYNIIN 358


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.135    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,603
Number of Sequences: 429
Number of extensions: 6027
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 5
length of query: 335
length of database: 140,377
effective HSP length: 58
effective length of query: 277
effective length of database: 115,495
effective search space: 31992115
effective search space used: 31992115
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)