GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002736-TA|BGIBMGA002736-PA|undefined
         (64 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   0.94 
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   2.2  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    24   2.2  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    24   2.9  
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch...    23   3.8  
SPAC806.02c |||Par A family ATPase iron cluster assembly protein...    23   3.8  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    23   5.0  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    23   6.6  
SPBC36.10 |||mitochondrial intermembrane space protein sorting p...    23   6.6  

>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 0.94
 Identities = 12/46 (26%), Positives = 21/46 (45%)

Query: 6   TDIDDTNNAVRMPRTAGKSIKKENEIVLRIYREENLSHVHFRDNSL 51
           TD++DT    +   T   S+K ++ I L     ++  H  F  N +
Sbjct: 132 TDVEDTQKLEQKHSTTPSSLKMKSSISLAAITADDSLHNSFSSNDI 177


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 9/33 (27%), Positives = 21/33 (63%)

Query: 22  GKSIKKENEIVLRIYREENLSHVHFRDNSLRYL 54
           G ++K    ++ R +R+EN+S+ H+  N + ++
Sbjct: 217 GITVKFMKALISRSWRKENVSYKHWIHNIIGFI 249


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 24.2 bits (50), Expect = 2.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 35  IYREENLSHVHFRDNSLRYL 54
           +YR    SH H  DN + YL
Sbjct: 189 LYRPPRASHCHLCDNCVEYL 208


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)

Query: 8   IDDTNNAVRMPRTAGKSIKKENEIVLRIYREENLSH 43
           + + NNA + PR   +S ++    ++RI  +EN  +
Sbjct: 273 VTNQNNANQKPRNPRQSYQRRMRDLVRIISQENYEY 308


>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 12  NNAVRMPRTAGKSIKKENEIVLRIYREENLSHVHFRDNSLRYLY 55
           NN  ++ R    ++K+ N    +++ + +  H+ F DN+  Y+Y
Sbjct: 155 NNDYQISRCNNYAVKR-NLDKKQVFVKGDFMHMPFEDNTFDYVY 197


>SPAC806.02c |||Par A family ATPase iron cluster assembly
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 608

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 10/35 (28%), Positives = 21/35 (60%)

Query: 26  KKENEIVLRIYREENLSHVHFRDNSLRYLYDNGVI 60
           +K +E +  +  E++ +H  +  NSL YL D+ ++
Sbjct: 560 EKHDEALWHVAYEQDHAHGVYEINSLEYLRDDRLL 594


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 7   DIDDTNNAVRMPRTAGKSIKKENEIVLRIYRE 38
           D+D+T++ V + +   K+  K+   V  +YR+
Sbjct: 446 DVDETSDEVSLQKRRRKNEHKDAGYVTELYRK 477


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)

Query: 41  LSHVHFRDNSLRYLYDN 57
           ++HV F  NSL+YL D+
Sbjct: 948 INHVCFVRNSLKYLLDD 964


>SPBC36.10 |||mitochondrial intermembrane space protein sorting
          protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 36 YREENLSHVHFRDNSLRYLYDNGVIVT 62
          Y  E+ +HV   D   R + DNGV+ T
Sbjct: 25 YPNEHATHVIAVDTLDRKVLDNGVLYT 51


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 315,458
Number of Sequences: 5004
Number of extensions: 10594
Number of successful extensions: 26
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 18
Number of HSP's gapped (non-prelim): 9
length of query: 64
length of database: 2,362,478
effective HSP length: 44
effective length of query: 20
effective length of database: 2,142,302
effective search space: 42846040
effective search space used: 42846040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)