GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002736-TA|BGIBMGA002736-PA|undefined
         (64 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0308 + 29115892-29116083,29116771-29116885,29116978-291170...    26   4.4  
03_06_0375 - 33474860-33474866,33475033-33475100,33475469-334755...    26   4.4  

>05_07_0308 +
           29115892-29116083,29116771-29116885,29116978-29117087,
           29118225-29118350,29118450-29118570,29118665-29118749,
           29118854-29118967,29119061-29119100,29119517-29119665,
           29120223-29120412,29121674-29122228,29123588-29123815,
           29123904-29124044,29124134-29124334,29124447-29124728
          Length = 882

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 3   TLYTDIDDTNNAVRMPRTAGKSIKKENEIVLRIYREENLSHV 44
           +LYT+I    NA  +  T   S++  +E + R+   E L HV
Sbjct: 775 SLYTEIGVGQNAKFVEVTPDTSLEAPDEAMFRMQLRERLLHV 816


>03_06_0375 -
           33474860-33474866,33475033-33475100,33475469-33475508,
           33476298-33476421,33476906-33476973,33477089-33477155,
           33477461-33477530,33477753-33477803,33477923-33477981,
           33478026-33478056,33478631-33478834
          Length = 262

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 23  KSIKKENEIVLRIYREENLSHVHFRDNSLRYLYDNGVIVT 62
           + +   N+I  R   +E L  V   + S  YLY  G  VT
Sbjct: 119 RDVDTGNKITERFRTDEALERVFVEEKSFTYLYQEGDNVT 158


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.135    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,736,977
Number of Sequences: 37544
Number of extensions: 53271
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 2
length of query: 64
length of database: 14,793,348
effective HSP length: 44
effective length of query: 20
effective length of database: 13,141,412
effective search space: 262828240
effective search space used: 262828240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)