GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002736-TA|BGIBMGA002736-PA|undefined
         (64 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    20   7.4  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           20   9.7  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            20   9.7  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            20   9.7  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 46  FRDNSLRYLYDN 57
           FRDNS  Y  DN
Sbjct: 178 FRDNSSYYTIDN 189


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 19.8 bits (39), Expect = 9.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 6   TDIDDTNNAVRMPRTAGKSIKKEN 29
           +DIDD   + R+ R      KK N
Sbjct: 506 SDIDDDCRSPRLDRKRKTGTKKRN 529


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 19.8 bits (39), Expect = 9.7
 Identities = 6/13 (46%), Positives = 11/13 (84%)

Query: 3    TLYTDIDDTNNAV 15
            T +TD+D TN+++
Sbjct: 1692 TKWTDLDTTNSSI 1704


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 19.8 bits (39), Expect = 9.7
 Identities = 6/13 (46%), Positives = 11/13 (84%)

Query: 3    TLYTDIDDTNNAV 15
            T +TD+D TN+++
Sbjct: 1693 TKWTDLDTTNSSI 1705


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.135    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,624
Number of Sequences: 2123
Number of extensions: 2289
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 64
length of database: 516,269
effective HSP length: 43
effective length of query: 21
effective length of database: 424,980
effective search space:  8924580
effective search space used:  8924580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)