GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002736-TA|BGIBMGA002736-PA|undefined
         (64 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070576-1|AAL48047.1|  527|Drosophila melanogaster RE12101p pro...    26   5.7  
AE014297-4273|AAN14303.1|  527|Drosophila melanogaster CG1520-PB...    26   5.7  
AE014297-4272|AAF56819.1|  527|Drosophila melanogaster CG1520-PA...    26   5.7  
AE014296-2445|AAF49690.1|  744|Drosophila melanogaster CG3349-PA...    25   9.9  

>AY070576-1|AAL48047.1|  527|Drosophila melanogaster RE12101p
          protein.
          Length = 527

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 2  STLYTDIDDTNNAVRMPRTAGKSIKKENEIVLRIYREENLSHVHFR 47
          STL T   + N AV   +  GK  +  N  V++IY+ E  +H H++
Sbjct: 19 STLLTQ--EENEAVF--KLLGKKCQTLNTAVVQIYKTEGSAHAHWK 60


>AE014297-4273|AAN14303.1|  527|Drosophila melanogaster CG1520-PB,
          isoform B protein.
          Length = 527

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 2  STLYTDIDDTNNAVRMPRTAGKSIKKENEIVLRIYREENLSHVHFR 47
          STL T   + N AV   +  GK  +  N  V++IY+ E  +H H++
Sbjct: 19 STLLTQ--EENEAVF--KLLGKKCQTLNTAVVQIYKTEGSAHAHWK 60


>AE014297-4272|AAF56819.1|  527|Drosophila melanogaster CG1520-PA,
          isoform A protein.
          Length = 527

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 2  STLYTDIDDTNNAVRMPRTAGKSIKKENEIVLRIYREENLSHVHFR 47
          STL T   + N AV   +  GK  +  N  V++IY+ E  +H H++
Sbjct: 19 STLLTQ--EENEAVF--KLLGKKCQTLNTAVVQIYKTEGSAHAHWK 60


>AE014296-2445|AAF49690.1|  744|Drosophila melanogaster CG3349-PA
           protein.
          Length = 744

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 11  TNNAVRMPRTAGKSIKKENEIVLRIYREENLSHVHFRD 48
           TN ++++     K  K +N+IV    ++EN+   HF +
Sbjct: 511 TNESIKLNDYLEKIEKDKNKIVAYYNQQENVVRAHFNE 548


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.319    0.135    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,121,505
Number of Sequences: 52641
Number of extensions: 99283
Number of successful extensions: 199
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 198
Number of HSP's gapped (non-prelim): 4
length of query: 64
length of database: 24,830,863
effective HSP length: 44
effective length of query: 20
effective length of database: 22,514,659
effective search space: 450293180
effective search space used: 450293180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)