GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002736-TA|BGIBMGA002736-PA|undefined
         (64 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11505-3|CAA77584.2|  468|Caenorhabditis elegans Hypothetical pr...    28   0.71 
Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical pr...    26   3.8  
Z81116-6|CAB03299.1|  416|Caenorhabditis elegans Hypothetical pr...    25   5.0  
AC006635-1|AAY86194.1|  201|Caenorhabditis elegans Hypothetical ...    25   8.7  

>Z11505-3|CAA77584.2|  468|Caenorhabditis elegans Hypothetical
           protein F59B2.5 protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 4   LYTDIDDTNNAVRMPRTAGKSIKK--ENEIVLRIYREENLS 42
           LY DI D  NA ++ +   K +KK  + E+++ +  EE+ S
Sbjct: 180 LYNDIRDFTNAQKLAQDLSKELKKLEDRELLIEVSVEESKS 220


>Z79752-5|CAB02082.3| 1119|Caenorhabditis elegans Hypothetical
           protein D2005.5 protein.
          Length = 1119

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 3   TLYTDIDDTNNAVRMPRTAGKSIKKENEIVLRIYREENLSHVH 45
           T  + ID+ N  V  P  + +      E +LR Y E  L+H H
Sbjct: 573 TRQSSIDELNEHVGKPDDSVELCLPAKENILRDYIERYLNHAH 615


>Z81116-6|CAB03299.1|  416|Caenorhabditis elegans Hypothetical
           protein T06C12.7 protein.
          Length = 416

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 20  TAGKSIKKENEIVLRIYREENLSHVH 45
           T G  + KEN IV   Y   NL+ VH
Sbjct: 255 TFGHKVYKENVIVCTNYNAANLNKVH 280


>AC006635-1|AAY86194.1|  201|Caenorhabditis elegans Hypothetical
           protein F38G1.3 protein.
          Length = 201

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 16  RMPRTAGKSIKKENEIVLRIYREENLSHVHFRDNSLRY 53
           R P T+  +     +I   ++R+++  H H ++NS  Y
Sbjct: 118 RSPTTSTSTTTTTTQITPSMHRKKHHHHHHHKENSSHY 155


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.135    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,629,772
Number of Sequences: 27539
Number of extensions: 54010
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 4
length of query: 64
length of database: 12,573,161
effective HSP length: 44
effective length of query: 20
effective length of database: 11,361,445
effective search space: 227228900
effective search space used: 227228900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)