GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002735-TA|BGIBMGA002735-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (290 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    29   1.0  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    26   5.5  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    26   5.5  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    26   7.2  
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo...    25   9.6  

>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 178 FARIKLGGPIKKWEEEMLPIVTPLAQWLGASNSCINPILYAFFNKKYRKGFVAIIKSRKC 237
           +++ KLG  + K  + + P V  + Q+L +  + + P    + NK Y   F+A+I     
Sbjct: 305 YSKTKLGRAVAKLPQNLQPFVFMIIQYLYSITTML-PCSLWYNNKLYSTAFLALIFGWSV 363

Query: 238 CGRLRYY 244
                YY
Sbjct: 364 WNGASYY 370


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 241 LRYYETIALQSSSTSTRKSWHYNN 264
           L Y E +AL     S  K WHY +
Sbjct: 95  LSYLEILALMDLIVSAEKEWHYGS 118


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 189 KWEE-EMLPIVTPLAQWLGASNSCINPILYAF 219
           KW+E E+LP  TP    +G S + I+ +++ F
Sbjct: 276 KWKESELLPEATPYNSTMGNSANTIDEVVWDF 307


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/33 (27%), Positives = 19/33 (57%)

Query: 101 VLYFVVGNLIFCYILPMVMITMCYILIWIKVWR 133
           V +F+  ++ F  I+ ++ +  CY+ + I  WR
Sbjct: 397 VYFFIKFDIYFTLIVLIMTLCYCYVTVKITSWR 429


>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 206 GASNSCINPILYAFFNK 222
           G S SCINP+  A F+K
Sbjct: 195 GGSESCINPLTVAGFSK 211


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.140    0.476 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,308,714
Number of Sequences: 5004
Number of extensions: 49011
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 5
length of query: 290
length of database: 2,362,478
effective HSP length: 72
effective length of query: 218
effective length of database: 2,002,190
effective search space: 436477420
effective search space used: 436477420
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 53 (25.4 bits)