GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002735-TA|BGIBMGA002735-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (290 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0073 + 17669311-17671635                                         30   2.5  
05_04_0397 - 20937280-20937386,20937494-20939681                       29   3.3  
04_04_1695 + 35433975-35437040                                         29   3.3  

>05_04_0073 + 17669311-17671635
          Length = 774

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 94  WPNPLSEVLYFVVGNLIFCY---ILPMVMITMCYILIWIKVWRRSIP 137
           W NPL+ +L  ++  ++  Y   ILP + + +  I +W   WR   P
Sbjct: 595 WRNPLTTILIHILFVILVLYPELILPTIFLYLFLIGVWYYRWRPRQP 641


>05_04_0397 - 20937280-20937386,20937494-20939681
          Length = 764

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 94  WPNPLSEVLYFVVGNLIFCY---ILPMVMITMCYILIW 128
           W NP++ VL  ++  ++ CY   ILP + + M  I +W
Sbjct: 625 WRNPITTVLVHMLFLILICYPELILPTIFLYMFMIGLW 662


>04_04_1695 + 35433975-35437040
          Length = 1021

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)

Query: 94  WPNPLSEVLYFVVGNLIFCY---ILPMVMITMCYILIW 128
           W NP++ +L  V+  ++ CY   ILP V + +  I +W
Sbjct: 840 WKNPVTTILVHVLFLILVCYPELILPTVFLYLFVIGVW 877


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.140    0.476 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,139,434
Number of Sequences: 37544
Number of extensions: 296445
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 3
length of query: 290
length of database: 14,793,348
effective HSP length: 81
effective length of query: 209
effective length of database: 11,752,284
effective search space: 2456227356
effective search space used: 2456227356
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)