GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002734-TA|BGIBMGA002734-PA|undefined
         (137 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1570 - 34492944-34493159,34493668-34493842,34493964-344940...    28   3.1  
11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415     27   5.3  
07_03_1739 - 29148685-29149017,29149564-29149726,29149844-291500...    27   7.1  
11_02_0059 - 7883980-7884141,7884423-7884467,7884629-7884715,788...    26   9.3  
05_03_0180 - 9272700-9272979,9273976-9274145                           26   9.3  

>04_04_1570 -
           34492944-34493159,34493668-34493842,34493964-34494068,
           34494454-34494623,34494760-34494830,34494950-34496799,
           34497003-34497052,34497147-34497263
          Length = 917

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 54  GCGMDHVCGMNHG 66
           GC ++H+CG+ HG
Sbjct: 407 GCNVEHICGVEHG 419


>11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415
          Length = 1490

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 112 WGFVEEQAGCSGGAGQECGENNLWAI 137
           WGF+ +   CS     + GENNL  +
Sbjct: 353 WGFISDLTNCSKLQTLDLGENNLGGV 378


>07_03_1739 -
           29148685-29149017,29149564-29149726,29149844-29150028,
           29150708-29150977
          Length = 316

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 44  DNWGSDSVDHGCGMDH 59
           DNW S  + H CG DH
Sbjct: 147 DNWKSKQLVHKCGKDH 162


>11_02_0059 -
           7883980-7884141,7884423-7884467,7884629-7884715,
           7885746-7885874,7885995-7886151,7886248-7886350,
           7887050-7887103,7887334-7887451,7888549-7888700,
           7890166-7891852
          Length = 897

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 113 GFVEEQAGCSGGAGQECGEN 132
           GF   +  CSGG G+ C +N
Sbjct: 544 GFGSVEFSCSGGGGEMCNDN 563


>05_03_0180 - 9272700-9272979,9273976-9274145
          Length = 149

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 104 WSMDSSYHWGFVEEQAGCSGGAGQECGENNLWAI 137
           W  D++ H G  EE+ G   G G+E G    W++
Sbjct: 26  WEADATGHRGGGEEEVG-GAGVGRESGGGVGWSL 58


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.134    0.465 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,978,235
Number of Sequences: 37544
Number of extensions: 133623
Number of successful extensions: 271
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 266
Number of HSP's gapped (non-prelim): 6
length of query: 137
length of database: 14,793,348
effective HSP length: 75
effective length of query: 62
effective length of database: 11,977,548
effective search space: 742607976
effective search space used: 742607976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)