GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002734-TA|BGIBMGA002734-PA|undefined
         (137 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089614-1|AAL90352.1|  417|Drosophila melanogaster RE28792p pro...    30   0.94 
AY060989-1|AAL28537.1|  222|Drosophila melanogaster GM14833p pro...    30   0.94 
AJ243904-1|CAB64937.1|  773|Drosophila melanogaster SF1 protein ...    30   0.94 
AE014297-2366|AAF55430.3|  787|Drosophila melanogaster CG5836-PA...    30   0.94 

>AY089614-1|AAL90352.1|  417|Drosophila melanogaster RE28792p
           protein.
          Length = 417

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 4/30 (13%)

Query: 46  WGSDSVDHGCGMDHVCGMN-HGCG---MDH 71
           WG+ + +HG GM+H  G++ HG G   MDH
Sbjct: 275 WGAAAHEHGMGMEHGMGLDQHGHGLAAMDH 304


>AY060989-1|AAL28537.1|  222|Drosophila melanogaster GM14833p
           protein.
          Length = 222

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 4/30 (13%)

Query: 46  WGSDSVDHGCGMDHVCGMN-HGCG---MDH 71
           WG+ + +HG GM+H  G++ HG G   MDH
Sbjct: 80  WGAAAHEHGMGMEHGMGLDQHGHGLAAMDH 109


>AJ243904-1|CAB64937.1|  773|Drosophila melanogaster SF1 protein
           protein.
          Length = 773

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 4/30 (13%)

Query: 46  WGSDSVDHGCGMDHVCGMN-HGCG---MDH 71
           WG+ + +HG GM+H  G++ HG G   MDH
Sbjct: 645 WGAAAHEHGMGMEHGMGLDQHGHGLAAMDH 674


>AE014297-2366|AAF55430.3|  787|Drosophila melanogaster CG5836-PA
           protein.
          Length = 787

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 4/30 (13%)

Query: 46  WGSDSVDHGCGMDHVCGMN-HGCG---MDH 71
           WG+ + +HG GM+H  G++ HG G   MDH
Sbjct: 645 WGAAAHEHGMGMEHGMGLDQHGHGLAAMDH 674


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.316    0.134    0.465 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,039,781
Number of Sequences: 52641
Number of extensions: 193795
Number of successful extensions: 468
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 460
Number of HSP's gapped (non-prelim): 12
length of query: 137
length of database: 24,830,863
effective HSP length: 78
effective length of query: 59
effective length of database: 20,724,865
effective search space: 1222767035
effective search space used: 1222767035
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)