GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002734-TA|BGIBMGA002734-PA|undefined
         (137 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41746-2|AAO25989.1|  635|Caenorhabditis elegans Aspartyl protea...    28   2.7  
Z46343-8|CAA86461.1|  549|Caenorhabditis elegans Hypothetical pr...    27   3.6  
Z35598-9|CAA84658.1|  549|Caenorhabditis elegans Hypothetical pr...    27   3.6  

>U41746-2|AAO25989.1|  635|Caenorhabditis elegans Aspartyl
          protease protein 2, isoforma protein.
          Length = 635

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 33 YRSGVDDWDRVDNWGSDSVDHGCGMDHV 60
          Y +GVDD++    +GSDS     G D V
Sbjct: 28 YAAGVDDYEHAGYYGSDSASGILGFDTV 55


>Z46343-8|CAA86461.1|  549|Caenorhabditis elegans Hypothetical
           protein F10F2.9 protein.
          Length = 549

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 102 DNWSMDSSYHWGFVEEQAGCSGGAGQECGENNLW 135
           DN+  + S +WG     +G +GG+G    +N+ W
Sbjct: 329 DNYGSELSNNWGGSNGGSGSNGGSGGGNTDNDNW 362


>Z35598-9|CAA84658.1|  549|Caenorhabditis elegans Hypothetical
           protein F10F2.9 protein.
          Length = 549

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 102 DNWSMDSSYHWGFVEEQAGCSGGAGQECGENNLW 135
           DN+  + S +WG     +G +GG+G    +N+ W
Sbjct: 329 DNYGSELSNNWGGSNGGSGSNGGSGGGNTDNDNW 362


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.134    0.465 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,730
Number of Sequences: 27539
Number of extensions: 89319
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 5
length of query: 137
length of database: 12,573,161
effective HSP length: 74
effective length of query: 63
effective length of database: 10,535,275
effective search space: 663722325
effective search space used: 663722325
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)