GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002733-TA|BGIBMGA002733-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (178 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    33   0.018
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.52 
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   1.2  
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    27   1.6  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    27   2.1  
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    27   2.1  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    27   2.1  
SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c...    27   2.1  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   3.7  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   3.7  
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    25   4.9  
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    25   4.9  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    25   6.5  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   6.5  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    25   6.5  
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    25   6.5  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   8.5  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    25   8.5  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   8.5  

>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 33.5 bits (73), Expect = 0.018
 Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 12/137 (8%)

Query: 24  NNERHHTRH--NHSHLRESHKNHVADMLSNSIIDAFNTRFVENSVLPDMEPLSSHMDLE- 80
           ++  HHT    +H+H    H +H  D  SNS  +A   +F++       E   SH  +E 
Sbjct: 13  DSTHHHTHDYDHHNHDHHGHDHHSHDSSSNSSSEAARLQFIQ-------EHGHSHDAMET 65

Query: 81  ERHYPSRMNGTLNRSDFGGDEFMYRHSGAMTAVYCAAYLLVFLVGLVGNCFVIAVVYRSP 140
              Y  R     N  DF    F     G + +   A  LL+ L  L+G  + I VV    
Sbjct: 66  PGSYLKRELPQFNHRDFSRRAFTIGVGGPVGSGKTA--LLLQLCRLLGEKYSIGVVTNDI 123

Query: 141 RMRTVTNFFIVNLAFAD 157
             R    F I N A  +
Sbjct: 124 FTREDQEFLIRNKALPE 140


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 13  DDFLNFSTQNPNNERHHTRHNHSHLRESHKNHVAD 47
           +  LN+   N N    HT H    L++SH+NH+ +
Sbjct: 70  EGILNYGGSNDNRPVSHT-HTFVELQKSHQNHLTE 103


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 10  YYTDDFLN-FSTQNPNNERHHTRHNHSHLRESHKNHVADMLSNSI 53
           Y  DD ++     + N++ HH  HNH+H      N   D  S S+
Sbjct: 521 YTNDDHVSQHEHTHENSQEHHHEHNHNHDHIHKYNEKCDHESISL 565


>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 34  HSHLRESHKNHVADMLSNSIIDAFNTRFVENSVLPDMEPLSSHMDLEERHYPSRMNGTLN 93
           ++HL   +  + +D L   IID +N      SV PDM  + +  D  E HY   + G L 
Sbjct: 221 YTHLSYKNWAYKSDWL---IIDRWNEML---SVQPDMIEVLTWNDYGESHYIGNIQGALP 274

Query: 94  RSDFG-GDEFMYRHSGAMTAVYCAAYLL 120
               G  D F +     + + Y +AY L
Sbjct: 275 AGSEGYVDGFDHTAWRYLMSPYISAYKL 302


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 16/69 (23%), Positives = 27/69 (39%)

Query: 17  NFSTQNPNNERHHTRHNHSHLRESHKNHVADMLSNSIIDAFNTRFVENSVLPDMEPLSSH 76
           + S+      ++H+R  +S      K H+ + +S       N  +      PD  PL + 
Sbjct: 116 SLSSNTSTPRKYHSRKPYSEPSVIDKEHLQNRVSIGTTHTQNDLYQSYVAYPDALPLFAA 175

Query: 77  MDLEERHYP 85
               ER YP
Sbjct: 176 THPFERRYP 184


>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 18/88 (20%), Positives = 37/88 (42%), Gaps = 1/88 (1%)

Query: 15  FLNFSTQNPNNERHHTRHNHSHLRESHKNHVADMLSNSIIDAFNTR-FVENSVLPDMEPL 73
           + + ST +P N+  H R ++  +  +  NH      +S+    + +  VE++     E  
Sbjct: 62  YQHLSTPDPGNDSGHVRSSNDRIPSTSSNHADGHHVDSVFSNLSAKPTVESNTEELEEEP 121

Query: 74  SSHMDLEERHYPSRMNGTLNRSDFGGDE 101
            S+        P   + T+   D+G +E
Sbjct: 122 PSYEQAAADTAPPYWDTTMVIPDYGSNE 149


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 17  NFSTQNPNNERHHTRHNHSHLRESHKNHVADMLSNSIIDAFNTRF 61
           N+S  + N++R H    HS  R+  ++H     S+S   A N R+
Sbjct: 427 NYSDHHNNDKRAHVSRRHSTSRKIAQSHTG---SSSTSSAANVRY 468


>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 124

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 27 RHHTRHNHSHLRESHKNHVADMLSNSIIDAFNTRFVENSVLPDMEPLSSHMDLEERHY 84
          +HH+  NH+  R        D + N + +  + +F +  + PD+  L  H  +E   Y
Sbjct: 9  KHHSNGNHALFRTRVYGRDLDQIHNDLTE--SEKFDKLPIDPDLPGLGQHYCIECARY 64


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 124  VGLVGNCFVIAVVYRSPRMRTVTNFFIVNLAFADILVIVFCLP 166
            +GL G C+  AV       RT T  +IV+L F  +L I +  P
Sbjct: 1253 LGLRGLCYDFAVQKHGIWRRTFTGLYIVHLLF--LLTIFYPCP 1293


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 19  STQNPNNERHHTRHNHSHLRESH 41
           S ++ ++E HH  H+H H   SH
Sbjct: 290 SDKDLHHEGHHHHHHHHHHHHSH 312


>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 87  RMNGTLNRSDFGGDEFMYRHSGAMTAVYCAAY 118
           + +  ++R  FGGDE +   +GA +A    AY
Sbjct: 225 KRDALIHRIQFGGDEVVKAKAGAGSATLSMAY 256


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 64  NSVLPDMEPLSSHMDLEERHYPSRMNGTLNRSDFGGDE-FMYRHSGA 109
           N V  D   L + +D+E  H     N  LN  D GG E FM  +  A
Sbjct: 25  NYVAKDTRRLGATIDIEHSHVRFLGNLVLNLWDCGGQEAFMENYLSA 71


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 12  TDDFLNFSTQNPNNERHHTRHNHSHLRESHKNH 44
           ++D L    Q P      +RHN S+L  + K +
Sbjct: 264 SEDNLTIQPQTPRRRHKRSRHNSSNLASTPKRN 296


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 17 NFSTQNPNNERHHTRHNHSHLRES-HKNH 44
          N + +  N+ R H RH+HS  RES H  H
Sbjct: 16 NETDRETNHSRRH-RHHHSRHRESKHGRH 43


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 114 YCAAYLLVFLVGLVGNCFVIAVVYRSPRMRTVTNFFIVNLAFADILVI 161
           +CA  +++F +GL      + V   SP +  +T F   ++A + I +I
Sbjct: 425 FCA--VILFFMGLFAKFAAVFVAIPSPVLGGMTTFLFSSVAVSGIAII 470


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 24  NNERHHTRHNHSHLRESHKNHVADMLSNSIIDAFNTRFVENSVLPDMEPLSSHMDLEERH 83
           +N   ++++ H+ +++  K++  D L+ S  + F  R  +N++  +    S H+D   R+
Sbjct: 258 SNSALNSQNEHTEVQK--KSNSIDNLTPSS-ELFRKRSRDNNLSRESSVSSKHLDYNSRN 314

Query: 84  YPSR 87
           Y  R
Sbjct: 315 YNKR 318


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 50   SNSIIDAFNTRFVENSVLPDMEPLSSHMDLEERHYPSRMNGT 91
            + S+ D F+ R V+ ++  D++P+S H D     Y S++  +
Sbjct: 1526 ARSLCD-FSDRVVDINMAEDLKPISVHSDQLTLAYASQLEAS 1566


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 25  NERHHTRHNHSHLRESHKNHVADMLSNSIIDAFNTRFVENSVLPDMEPLSSHMDLEERHY 84
           N R   R +     ++ KN  ++ L   I+     +  EN  L D E   +  +LEE + 
Sbjct: 530 NTRREKRKSKKEFLKAQKNEASNNLKQEIVSKAGAQETENDDLID-EESDALSELEEDYR 588

Query: 85  P-SRMNGTLNRSDFG 98
              +     N++ FG
Sbjct: 589 QLKKSKKRKNQASFG 603


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 104 YRHSGAMTAVYCAAY-LLVFLVGLVGNCFVIAVVYRSPRMRTVTNFFIVNLAFADILVIV 162
           +R+S ++T V  A+Y +++ +VG + N F ++  Y   R  +     I+  + + I  ++
Sbjct: 247 FRYSWSLTLVVLASYPIIILVVGFI-NSF-LSSAYEKDRKSSEKAASILEKSISAIQTVI 304

Query: 163 F 163
           F
Sbjct: 305 F 305


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.326    0.138    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 874,933
Number of Sequences: 5004
Number of extensions: 36800
Number of successful extensions: 168
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 25
length of query: 178
length of database: 2,362,478
effective HSP length: 68
effective length of query: 110
effective length of database: 2,022,206
effective search space: 222442660
effective search space used: 222442660
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 51 (24.6 bits)