GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002733-TA|BGIBMGA002733-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (178 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412...    30   0.92 
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362...    30   0.92 
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355     29   2.8  
01_06_1256 - 35775149-35775590,35775782-35775840                       28   3.7  
09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034...    27   8.5  

>09_06_0016 -
           20240358-20240797,20241040-20241131,20241132-20241250,
           20241398-20241561,20241664-20241757,20242048-20242080,
           20242361-20242478,20242712-20242812,20242882-20242962,
           20243138-20243335,20243411-20243545,20243662-20243667,
           20243727-20243805,20243845-20243896,20244328-20244388,
           20244475-20244532,20245137-20245225,20246305-20246799
          Length = 804

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 7   PVDYYTDDFLNFSTQNPNNERHHTRHNH--SHLRESHKNHVADM 48
           P+ Y+ D  +    Q     RH   H+H  SH  ++HK H  ++
Sbjct: 671 PLYYWWDGVVGSEAQERARRRHKRAHSHRHSHHHDAHKRHKTEL 714


>02_01_0500 -
           3623837-3624019,3624591-3624778,3625209-3626147,
           3626311-3626479,3626701-3626871,3626948-3627016,
           3627094-3627201,3627844-3627997,3628659-3628738,
           3628822-3628914,3628951-3629073,3629165-3629915,
           3630123-3630163,3630338-3630385
          Length = 1038

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 4/96 (4%)

Query: 3   PLRLPVDYYTD--DFLNFSTQNPNNERHHTRHNHSHLRESHKNHVADMLSNSIIDAFNTR 60
           P R   D Y+   D+    T + N+ +HH   ++  +   H N+ AD   +     F   
Sbjct: 77  PRRFHDDEYSTARDYRRHDTYHCNDGKHHEFESYGGVDILHDNYAADNYESGSYRDF--C 134

Query: 61  FVENSVLPDMEPLSSHMDLEERHYPSRMNGTLNRSD 96
           F  N  +   +    H D E+R+  S  +   +R D
Sbjct: 135 FDRNKRIGSRDRAEFHGDFEDRYRSSHQSREDSRED 170


>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
          Length = 1109

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)

Query: 25  NERHHTRHNHSHLRESHKNH 44
           ++RHH RH+H H R+ H +H
Sbjct: 134 SQRHHHRHHH-HQRQRHHHH 152


>01_06_1256 - 35775149-35775590,35775782-35775840
          Length = 166

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 20 TQNPNNERHHTRHNHSHLRESHKNHVADMLSNSI 53
          T  P N  HH +     LR   K+ +  + SN +
Sbjct: 47 THKPRNHHHHQQQQQQQLRGEEKSKLKQLTSNGV 80


>09_04_0680 -
           19401891-19402049,19402556-19402928,19403385-19403421,
           19403587-19403667,19405215-19405280,19407453-19407948,
           19408050-19408283,19408473-19408772,19409241-19409423,
           19410412-19410414
          Length = 643

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)

Query: 109 AMTAVYCAAYLLVFLVGLVGNCFVIAV--VY--RSPRMRTVTNFFIVNLAFADILVIV 162
           AM     +  L +   G V     IAV  VY  R  R+R +T+F ++N+A   ++V+V
Sbjct: 501 AMVKTNSSPLLTINAFGCVVEAAYIAVYLVYAPRPARLRALTSFLLLNVAAFSLVVVV 558


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.326    0.138    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,221,249
Number of Sequences: 37544
Number of extensions: 209718
Number of successful extensions: 733
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 728
Number of HSP's gapped (non-prelim): 7
length of query: 178
length of database: 14,793,348
effective HSP length: 78
effective length of query: 100
effective length of database: 11,864,916
effective search space: 1186491600
effective search space used: 1186491600
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 57 (27.1 bits)