GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002733-TA|BGIBMGA002733-PA|IPR000276|Rhodopsin-like GPCR
superfamily
         (178 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    54   6e-10
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    51   7e-09
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    48   5e-08
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    48   5e-08
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    47   1e-07
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    47   1e-07
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    45   5e-07
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    45   5e-07
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    42   3e-06
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    40   1e-05
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    39   2e-05
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    38   7e-05
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    36   2e-04
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    35   4e-04
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.56 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   0.97 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   5.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   6.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   6.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.1  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 54.4 bits (125), Expect = 6e-10
 Identities = 21/52 (40%), Positives = 36/52 (69%)

Query: 118 YLLVFLVGLVGNCFVIAVVYRSPRMRTVTNFFIVNLAFADILVIVFCLPATL 169
           Y+++F+ G VGN     V++R+P M+T TN+++ NLA +D+L ++  LP  L
Sbjct: 40  YVVIFVTGFVGNIITCIVIWRNPSMQTPTNYYLFNLAVSDLLFLILGLPFEL 91


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 50.8 bits (116), Expect = 7e-09
 Identities = 18/52 (34%), Positives = 36/52 (69%)

Query: 118 YLLVFLVGLVGNCFVIAVVYRSPRMRTVTNFFIVNLAFADILVIVFCLPATL 169
           Y+++F+ G+ GN     V+ ++P M+T TN+++ +LA +D++++V  LP  L
Sbjct: 47  YMIIFVTGIFGNITTCTVIIKNPAMQTATNYYLFSLAISDLILLVLGLPNEL 98


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 48.0 bits (109), Expect = 5e-08
 Identities = 19/49 (38%), Positives = 33/49 (67%)

Query: 118 YLLVFLVGLVGNCFVIAVVYRSPRMRTVTNFFIVNLAFADILVIVFCLP 166
           Y ++F+ GLVGN     V+ R+  M T TN+++ +LA +D+L+++  LP
Sbjct: 60  YAVIFVTGLVGNVSTCVVIARNKSMHTATNYYLFSLAVSDLLLLISGLP 108


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 48.0 bits (109), Expect = 5e-08
 Identities = 25/68 (36%), Positives = 39/68 (57%)

Query: 107 SGAMTAVYCAAYLLVFLVGLVGNCFVIAVVYRSPRMRTVTNFFIVNLAFADILVIVFCLP 166
           SG    V      +V ++ ++GN  VI  VY + ++R VTN FIV+LA AD++V +  LP
Sbjct: 61  SGPWILVTLIVLAIVNVMVVLGNVLVILAVYHTSKLRNVTNMFIVSLAVADLMVGLAVLP 120

Query: 167 ATLMSNIF 174
            +    +F
Sbjct: 121 FSATWEVF 128


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 46.8 bits (106), Expect = 1e-07
 Identities = 22/58 (37%), Positives = 37/58 (63%)

Query: 113 VYCAAYLLVFLVGLVGNCFVIAVVYRSPRMRTVTNFFIVNLAFADILVIVFCLPATLM 170
           V    + ++ +V +VGN  VIA V  + R+R+VTN F+ +LA AD+LV +  +P  ++
Sbjct: 39  VLAGLFTMLIIVTIVGNTLVIAAVITTRRLRSVTNCFVSSLAAADLLVGLAVMPPAVL 96


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 46.8 bits (106), Expect = 1e-07
 Identities = 23/48 (47%), Positives = 32/48 (66%)

Query: 119 LLVFLVGLVGNCFVIAVVYRSPRMRTVTNFFIVNLAFADILVIVFCLP 166
           ++V  + L GN  VI  V R   ++TVTN+FIV+LA AD+LV V  +P
Sbjct: 194 VIVPCLTLFGNVLVILAVVRERALQTVTNYFIVSLAVADLLVAVLVMP 241


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 44.8 bits (101), Expect = 5e-07
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 118 YLLVFLVGLVGNCFVIAVVYRSPRMRTVTNFFIVNLAFADILVIVFCLPATLMSN 172
           Y ++ ++ LVGNC VI +   S  +RT +N FIV+LA  DI ++ F +P  ++S+
Sbjct: 64  YSMLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDI-IMAFEMPMLVISS 117


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 44.8 bits (101), Expect = 5e-07
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 118 YLLVFLVGLVGNCFVIAVVYRSPRMRTVTNFFIVNLAFADILVIVFCLPATLMSN 172
           Y ++ ++ LVGNC VI +   S  +RT +N FIV+LA  DI ++ F +P  ++S+
Sbjct: 64  YSMLLIMSLVGNCCVIWIFSTSKSLRTPSNMFIVSLAIFDI-IMAFEMPMLVISS 117


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 42.3 bits (95), Expect = 3e-06
 Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 116 AAYLLVFLVGLV-GNCFVIAVVYRSPRMRTVTNFFIVNLAFADILVIVFCLP 166
           A  L +F V  V GN  VI  V R   + T TN+F+ +LAFAD LV +  +P
Sbjct: 49  AILLFLFSVATVFGNTLVILAVVRERYLHTATNYFVTSLAFADCLVGLVVMP 100


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 40.3 bits (90), Expect = 1e-05
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 116 AAYLLVFLV--GLVGNCFVIAVVYRSPRMRTVTNFFIVNLAFADILVIVFCLP 166
           A+  L FLV   ++GN  VI  V+    +R V NFFIV+LA AD+ V +  +P
Sbjct: 39  ASLTLGFLVLATVLGNALVILSVFTYRPLRIVQNFFIVSLAVADLAVAILVMP 91


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 39.1 bits (87), Expect = 2e-05
 Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 124 VGLVGNCFVIAVVYRSPRMRTVTNFFIVNLAFADILVIVFCLPATLMSNIF 174
           V ++GN  V+ +   +  +RT +N F++NLA +D L ++FC+   ++ N +
Sbjct: 31  VSVMGNGMVVYIFLSTKSLRTPSNLFVINLAISDFL-MMFCMSPPMVINCY 80


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 37.5 bits (83), Expect = 7e-05
 Identities = 16/45 (35%), Positives = 27/45 (60%)

Query: 118 YLLVFLVGLVGNCFVIAVVYRSPRMRTVTNFFIVNLAFADILVIV 162
           Y+L   + L+GN  VI +   +  +RT +N F+VNLA  D  +++
Sbjct: 55  YILFTFLALLGNGLVIWIFCAAKSLRTPSNMFVVNLAICDFFMMI 99


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 124 VGLVGNCFVIAVVYRSPRMRTVTNFFIVNLAFADILVIVFCLPATLMSNIF 174
           V  +GN  V+ +   +  +RT +N F++NLA ++ L ++FC+   ++ N +
Sbjct: 65  VSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFL-MMFCMSPPMVINCY 114


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 35.1 bits (77), Expect = 4e-04
 Identities = 13/43 (30%), Positives = 24/43 (55%)

Query: 118 YLLVFLVGLVGNCFVIAVVYRSPRMRTVTNFFIVNLAFADILV 160
           +L++  + + GN  V   +Y    +R + N F+ +LA AD+ V
Sbjct: 32  FLILIFLSVAGNILVCVAIYTDRGLRRIGNLFLASLAIADLFV 74


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 32  HNHSHLRESHKNHVADMLSNSIIDAFNTRFVENSVLPDMEPLSSHMDLEERHYPSRMNGT 91
           +NH+ L  S  NH  + L + +   ++     N    ++E  + + DLEE      +   
Sbjct: 221 YNHARLM-SQDNHSKEYLVSIMFSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHM 279

Query: 92  LNRSDFGGD 100
           ++  D  GD
Sbjct: 280 ISYDDTDGD 288


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 0.97
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 4/28 (14%)

Query: 18  FSTQNPNNERHHTR-HNHSHLRESHKNH 44
           +ST  P+   HHT  H HSH+  +  +H
Sbjct: 409 YSTPGPH---HHTMGHGHSHIHATPHHH 433



 Score = 23.8 bits (49), Expect = 0.97
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 29  HTRHNHSHLRESHKNHVADMLSNSIIDAFNTRFVENSVLPDMEPLSSHMDLEE 81
           HT H+H H  E+    V  +L N+   A N   +   +L +++ ++  +  EE
Sbjct: 461 HTPHHHPHPPETPGPQVETILQNACFCARNELMM---ILKEIKIITDQLKSEE 510



 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/21 (33%), Positives = 10/21 (47%)

Query: 32  HNHSHLRESHKNHVADMLSNS 52
           H+HSH    H  H   +  +S
Sbjct: 432 HHHSHAATPHHQHSTPLAHSS 452


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/31 (25%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 13  DDFLNFSTQNPNNERHHTRHNHSHLRESHKN 43
           D+  N + QN NN++++ + N ++ + +++N
Sbjct: 421 DNIQNTNNQNDNNQKNN-KKNANNQKNNNQN 450



 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 17  NFSTQNPNNERHHTRHNHSHLRESHKNH 44
           N + QN NN+  + + N+     + KN+
Sbjct: 420 NDNIQNTNNQNDNNQKNNKKNANNQKNN 447


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 20  TQNPNNERHHTRHNHSHLRESHKNH 44
           + N NN +H+ + +HS    +  N+
Sbjct: 438 SDNQNNNQHNDQAHHSSKSNNRHNN 462


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 151 VNLAFADILVIVFCLPATLMSNIFVHNN 178
           + L+FA I  +V  LP T++ ++  H N
Sbjct: 155 IMLSFAWIGSVVCSLPQTIVFHLETHPN 182


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 26  ERHHTRHNHSHLRES 40
           +RHH   NH H  +S
Sbjct: 139 QRHHHLQNHHHHLQS 153


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.138    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,122
Number of Sequences: 429
Number of extensions: 2323
Number of successful extensions: 26
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 24
length of query: 178
length of database: 140,377
effective HSP length: 54
effective length of query: 124
effective length of database: 117,211
effective search space: 14534164
effective search space used: 14534164
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 41 (20.6 bits)