GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002732-TA|BGIBMGA002732-PA|IPR001478|PDZ/DHR/GLGF,
IPR006020|Phosphotyrosine interaction region
         (739 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    24   4.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   7.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   7.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   7.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   7.5  

>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 277 VSRIKNGLLLPEWTRFRKAYKYSTEKRKKR 306
           VS I   L   EW +    ++Y  EK K R
Sbjct: 93  VSIILGSLKTKEWAKLNNKFQYIDEKLKTR 122


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 51  GAHDKKEHNILKETEVFSDIQKEINEHDNRKVSNISDANEDIVFNDAISKSTSLERISA 109
           G + +++     +TE   +IQKE  +     +SN +DA+       A+  S  + RI A
Sbjct: 511 GMNRRRDDEADVKTEDLDEIQKEKGDEYYETISNHTDASS----AKAVKNSDHITRIYA 565



 Score = 22.6 bits (46), Expect = 10.0
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 12   TNRICDVDRKEETSENFLNTEEADRENFTEEVNGELDNEGAHDKKEHNI 60
            T  +     K+E  E     EEA R+   + + G L + G  D  E +I
Sbjct: 1061 TREVAVKKTKKELEEEKKQAEEAKRKAKQKSLLGFLQSGGTSDDDEGSI 1109


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 51  GAHDKKEHNILKETEVFSDIQKEINEHDNRKVSNISDANEDIVFNDAISKSTSLERISA 109
           G + +++     +TE   +IQKE  +     +SN +DA+       A+  S  + RI A
Sbjct: 511 GMNRRRDDEADVKTEDLDEIQKEKGDEYYETISNHTDASS----AKAVKNSDHITRIYA 565



 Score = 22.6 bits (46), Expect = 10.0
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 12   TNRICDVDRKEETSENFLNTEEADRENFTEEVNGELDNEGAHDKKEHNI 60
            T  +     K+E  E     EEA R+   + + G L + G  D  E +I
Sbjct: 1061 TREVAVKKTKKELEEEKKQAEEAKRKAKQKSLLGFLQSGGTSDDDEGSI 1109


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 51  GAHDKKEHNILKETEVFSDIQKEINEHDNRKVSNISDANEDIVFNDAISKSTSLERISA 109
           G + +++     +TE   +IQKE  +     +SN +DA+       A+  S  + RI A
Sbjct: 511 GMNRRRDDEADVKTEDLDEIQKEKGDEYYETISNHTDASS----AKAVKNSDHITRIYA 565



 Score = 22.6 bits (46), Expect = 10.0
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 12   TNRICDVDRKEETSENFLNTEEADRENFTEEVNGELDNEGAHDKKEHNI 60
            T  +     K+E  E     EEA R+   + + G L + G  D  E +I
Sbjct: 1061 TREVAVKKTKKELEEEKKQAEEAKRKAKQKSLLGFLQSGGTSDDDEGSI 1109


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 51  GAHDKKEHNILKETEVFSDIQKEINEHDNRKVSNISDANEDIVFNDAISKSTSLERISA 109
           G + +++     +TE   +IQKE  +     +SN +DA+       A+  S  + RI A
Sbjct: 511 GMNRRRDDEADVKTEDLDEIQKEKGDEYYETISNHTDASS----AKAVKNSDHITRIYA 565



 Score = 22.6 bits (46), Expect = 10.0
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 12   TNRICDVDRKEETSENFLNTEEADRENFTEEVNGELDNEGAHDKKEHNI 60
            T  +     K+E  E     EEA R+   + + G L + G  D  E +I
Sbjct: 1061 TREVAVKKTKKELEEEKKQAEEAKRKAKQKSLLGFLQSGGTSDDDEGSI 1109


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.131    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,582
Number of Sequences: 317
Number of extensions: 5758
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 9
length of query: 739
length of database: 114,650
effective HSP length: 62
effective length of query: 677
effective length of database: 94,996
effective search space: 64312292
effective search space used: 64312292
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 46 (22.6 bits)